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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ADAMTS3
ENSSSCG00000038180
ENSG00000156140
ADAM metallopeptidase with thrombospondin type 1 motif 3
Tissue enhanced
Detected in many
cartilage:
37.5
ADAMTS4
ENSSSCG00000006359
ENSG00000158859
ADAM metallopeptidase with thrombospondin type 1 motif 4
Group enriched
Detected in many
aorta:
56.1
mesothelial tissue:
84.5
ADAMTS6
ENSSSCG00000016943
ENSG00000049192
ADAM metallopeptidase with thrombospondin type 1 motif 6
Tissue enhanced
Detected in all
cartilage:
53.8
ADAMTS9
ENSSSCG00000011496
ENSG00000163638
ADAM metallopeptidase with thrombospondin type 1 motif 9
Tissue enhanced
Detected in many
mesothelial tissue:
68.1
ADAMTSL1
ENSSSCG00000040366
ENSG00000178031
ADAMTS like 1
Tissue enhanced
Detected in all
synovial tissue:
31.6
ADAMTSL3
ENSSSCG00000001793
ENSG00000156218
ADAMTS like 3
Tissue enriched
Detected in many
cartilage:
99.8
ADAMTSL4
ENSSSCG00000006651
ENSG00000143382
ADAMTS like 4
Tissue enhanced
Detected in many
cartilage:
56.3
ADARB1
ENSSSCG00000012089
ENSG00000197381
Adenosine deaminase, RNA specific B1
Low tissue specificity
Detected in all
ADARB2
ENSSSCG00000011160
ENSG00000185736
Adenosine deaminase, RNA specific B2 (inactive)
Tissue enhanced
Detected in many
brain:
20.3
male glands:
16.5
ADCY1
ENSSSCG00000016726
ENSG00000164742
Adenylate cyclase 1
Group enriched
Detected in some
brain:
51.5
lens:
21.6
retina:
23.4
ADCY3
ENSSSCG00000008578
ENSG00000138031
Adenylate cyclase 3
Tissue enhanced
Detected in all
ovary:
38.6
ADCY5
ENSSSCG00000027952
ENSG00000173175
Adenylate cyclase 5
Tissue enriched
Detected in many
brain:
73.5
ADCY7
ENSSSCG00000039408
ENSG00000121281
Adenylate cyclase 7
Tissue enhanced
Detected in many
lymphoid tissue:
48.3
ADCY8
ENSSSCG00000031717
ENSG00000155897
Adenylate cyclase 8
Tissue enhanced
Detected in all
upper respiratory system:
30.9
ADCYAP1
ENSSSCG00000035186
ENSG00000141433
Pituitary adenylate cyclase-activating polypeptide precursor
Tissue enriched
Detected in some
brain:
22.4
ADD2
ENSSSCG00000020736
ENSG00000075340
Adducin 2
Tissue enhanced
Detected in some
brain:
29.2
cervix:
35.0
endometrium:
17.3
ovary:
15.1
retina:
17.8
ADGRA1
ENSSSCG00000039199
ENSG00000197177
Adhesion G protein-coupled receptor A1
Tissue enhanced
Detected in many
male glands:
31.0
ADGRA2
ENSSSCG00000015825
ENSG00000020181
Adhesion G protein-coupled receptor A2
Low tissue specificity
Detected in all
ADGRB1
ENSSSCG00000035891
ENSG00000181790
Adhesion G protein-coupled receptor B1
Group enriched
Detected in many
adrenal gland:
29.7
brain:
32.9
ADGRB2
ENSSSCG00000003604
ENSG00000121753
Adhesion G protein-coupled receptor B2
Tissue enriched
Detected in many
brain:
31.1
ADGRB3
ENSSSCG00000004270
ENSG00000135298
Adhesion G protein-coupled receptor B3
Tissue enhanced
Detected in some
brain:
22.8
pineal gland:
14.5
retina:
8.2
ADGRD1
ENSSSCG00000009745
ENSG00000111452
Adhesion G protein-coupled receptor D1
Tissue enhanced
Detected in many
mesothelial tissue:
53.9
ADGRE5
ENSSSCG00000013775
ENSG00000123146
Adhesion G protein-coupled receptor E5
Low tissue specificity
Detected in many
ADGRG1
ENSSSCG00000002815
ENSG00000205336
Adhesion G-protein coupled receptor G1 precursor
Low tissue specificity
Detected in all
ADGRG6
ENSSSCG00000004139
ENSG00000112414
Adhesion G protein-coupled receptor G6
Tissue enriched
Detected in many
cartilage:
97.1
ADGRG7
ENSSSCG00000011962
ENSG00000144820
Adhesion G protein-coupled receptor G7
Group enriched
Detected in some
large intestine:
44.8
small intestine:
19.2
ADGRL2
ENSSSCG00000003761
ENSG00000117114
Adhesion G protein-coupled receptor L2
Low tissue specificity
Detected in all
ADGRL4
ENSSSCG00000003762
ENSG00000162618
Adhesion G protein-coupled receptor L4
Low tissue specificity
Detected in many
ADIPOR2
ENSSSCG00000000757
ENSG00000006831
Adiponectin receptor protein 2
Tissue enhanced
Detected in all
adipose tissue:
72.1
bone marrow:
55.2
ADIRF
ENSSSCG00000037918
ENSG00000148671
Adipogenesis regulatory factor
Group enriched
Detected in many
adipose tissue:
186.4
cornea:
417.2
penis:
193.0
ADM
ENSSSCG00000013408
ENSG00000148926
ADM Adrenomedullin Proadrenomedullin N-20 terminal peptide
Tissue enhanced
Detected in many
aorta:
30.1
cartilage:
36.0
ADORA2A
ENSSSCG00000010054
ENSG00000128271
Adenosine A2a receptor
Tissue enriched
Detected in many
brain:
67.0
ADORA3
ENSSSCG00000006788
ENSG00000282608
Transmembrane and immunoglobulin domain containing 3 isoform 3
Group enriched
Detected in many
brain:
17.5
lymphoid tissue:
32.3
ADRA1B
ENSSSCG00000017041
ENSG00000170214
Adrenoceptor alpha 1B
Tissue enhanced
Detected in many
lymphoid tissue:
12.2
penis:
20.7
pineal gland:
21.9
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ADRA2A
ENSSSCG00000010629
ENSG00000150594
Alpha-2A adrenergic receptor
Tissue enhanced
Detected in many
gallbladder:
51.0
stomach:
34.8
ADRA2C
ENSSSCG00000008703
ENSG00000184160
Adrenoceptor alpha 2C
Tissue enhanced
Detected in many
brain:
28.9
penis:
24.3
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
ADSSL1
ENSSSCG00000037334
ENSG00000185100
Adenylosuccinate synthetase isozyme 1
Tissue enhanced
Detected in many
skeletal muscle:
122.1
AEBP1
ENSSSCG00000016754
ENSG00000106624
AE binding protein 1
Tissue enhanced
Detected in many
adrenal gland:
149.5
AFAP1L2
ENSSSCG00000010650
ENSG00000169129
Actin filament associated protein 1 like 2
Tissue enhanced
Detected in all
brain:
44.6
choroid plexus:
44.2
vagus nerve:
62.3
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGAP2
ENSSSCG00000038732
ENSG00000135439
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
Tissue enriched
Detected in many
brain:
57.7
AGBL2
ENSSSCG00000040838
ENSG00000165923
ATP/GTP binding protein like 2
Tissue enhanced
Detected in all
testis:
50.5
AGPAT4
ENSSSCG00000004033
ENSG00000026652
1-acyl-sn-glycerol-3-phosphate acyltransferase delta
Tissue enriched
Detected in many
brain:
52.4
AGT
ENSSSCG00000010184
ENSG00000135744
Angiotensinogen
Tissue enhanced
Detected in many
adipose tissue:
99.8
brain:
96.0
liver:
70.3
AGTPBP1
ENSSSCG00000010957
ENSG00000135049
ATP/GTP binding protein 1
Tissue enhanced
Detected in all
brain:
24.7
AGTR1
ENSSSCG00000011695
ENSG00000144891
Type-1 angiotensin II receptor
Tissue enhanced
Detected in many
adipose tissue:
29.1
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