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Human disease related genes
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UMAP gene cluster
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Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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245 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACSL5
ENSSSCG00000031789
ENSG00000197142
Long-chain-fatty-acid--CoA ligase 5
Low tissue specificity
Detected in many
ADAM19
ENSSSCG00000017052
ENSG00000135074
ADAM metallopeptidase domain 19
Low tissue specificity
Detected in many
ANGPT2
ENSSSCG00000015753
ENSG00000091879
Angiopoietin-2 precursor
Low tissue specificity
Detected in many
ANKFY1
ENSSSCG00000017877
ENSG00000185722
Ankyrin repeat and FYVE domain containing 1
Low tissue specificity
Detected in all
ARHGAP27
ENSSSCG00000017328
ENSG00000159314
Rho GTPase activating protein 27
Tissue enhanced
Detected in many
stomach:
44.5
ARID5A
ENSSSCG00000008123
ENSG00000196843
AT-rich interaction domain 5A
Low tissue specificity
Detected in many
ARPC1B
ENSSSCG00000007625
ENSG00000130429
Actin-related protein 2/3 complex subunit 1B
Low tissue specificity
Detected in many
ARRDC2
ENSSSCG00000013893
ENSG00000105643
Arrestin domain containing 2
Low tissue specificity
Detected in many
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
BAK1
ENSSSCG00000001516
ENSG00000030110
BCL2 antagonist/killer 1
Tissue enhanced
Detected in all
stomach:
59.4
BATF2
ENSSSCG00000023178
ENSG00000168062
Basic leucine zipper ATF-like transcription factor 2
Tissue enhanced
Detected in many
large intestine:
16.1
stomach:
56.1
BAZ1A
ENSSSCG00000001958
ENSG00000198604
Bromodomain adjacent to zinc finger domain protein 1A
Low tissue specificity
Detected in many
BST2
ENSSSCG00000033453
ENSG00000130303
Bone marrow stromal antigen 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
C19orf66
ENSSSCG00000013664
ENSG00000130813
Repressor of yield of DENV protein
Low tissue specificity
Detected in many
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C4BPA
ENSSSCG00000015662
Apolipoprotein R precursor
Tissue enhanced
Detected in many
small intestine:
84.1
synovial tissue:
193.7
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
CARD6
ENSSSCG00000029367
ENSG00000132357
Caspase recruitment domain family member 6
Low tissue specificity
Detected in all
CASP8
ENSSSCG00000028157
ENSG00000064012
Caspase-8
Low tissue specificity
Detected in all
CCDC50
ENSSSCG00000036423
ENSG00000152492
Coiled-coil domain containing 50
Low tissue specificity
Detected in all
CCDC69
ENSSSCG00000040411
ENSG00000198624
Coiled-coil domain containing 69
Tissue enhanced
Detected in many
adipose tissue:
56.7
lymphoid tissue:
64.7
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL2
ENSSSCG00000017723
ENSG00000108691
C-C motif chemokine 2
Tissue enhanced
Detected in many
aorta:
52.5
ovary:
88.5
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CD14
ENSSSCG00000014369
ENSG00000170458
Monocyte differentiation antigen CD14 precursor
Tissue enhanced
Detected in all
liver:
74.2
synovial tissue:
43.7
CD163
ENSSSCG00000033146
ENSG00000177575
Scavenger receptor cysteine-rich type 1 protein M130 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
37.2
synovial tissue:
62.7
CD74
ENSSSCG00000033262
ENSG00000019582
CD74 antigen
Tissue enhanced
Detected in all
lymphoid tissue:
240.1
CHST15
ENSSSCG00000029482
ENSG00000182022
Carbohydrate sulfotransferase 15
Tissue enhanced
Detected in many
cartilage:
47.5
lymphoid tissue:
44.7
CIITA
ENSSSCG00000007901
ENSG00000179583
MHC class II transactivator
Tissue enhanced
Detected in all
lymphoid tissue:
56.8
CMKLR1
ENSSSCG00000031346
ENSG00000174600
Chemokine-like receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.4
synovial tissue:
24.6
CMPK2
ENSSSCG00000008647
ENSG00000134326
Cytidine/uridine monophosphate kinase 2
Tissue enhanced
Detected in many
small intestine:
30.4
stomach:
30.7
CNN2
ENSSSCG00000039542
ENSG00000064666
Calponin 2
Low tissue specificity
Detected in all
CTSA
ENSSSCG00000007431
ENSG00000064601
Lysosomal protective protein precursor
Low tissue specificity
Detected in all
CTSD
ENSSSCG00000040793
ENSG00000117984,ENSG00000250644
Cathepsin D precursor
Tissue enhanced
Detected in all
synovial tissue:
98.7
CYBA
ENSSSCG00000031493
ENSG00000051523
Cytochrome b-245 light chain
Low tissue specificity
Detected in all
CYTH1
ENSSSCG00000017167
ENSG00000108669
Cytohesin 1
Low tissue specificity
Detected in all
DDX60
ENSSSCG00000009720
ENSG00000137628
DExD/H-box helicase 60
Tissue enhanced
Detected in many
large intestine:
24.9
small intestine:
27.5
stomach:
25.8
DHX58
ENSSSCG00000017416
ENSG00000108771
Probable ATP-dependent RNA helicase DHX58
Tissue enhanced
Detected in all
testis:
30.1
DNASE1L3
ENSSSCG00000032019
ENSG00000163687
Deoxyribonuclease 1 like 3
Tissue enhanced
Detected in many
lymphoid tissue:
23.3
DNASE2
ENSSSCG00000013731
ENSG00000105612
Deoxyribonuclease-2-alpha precursor
Low tissue specificity
Detected in all
DOK1
ENSSSCG00000008265
ENSG00000115325
Docking protein 1
Tissue enhanced
Detected in many
cartilage:
48.4
DTX3L
ENSSSCG00000011876
ENSG00000163840
Deltex E3 ubiquitin ligase 3L
Tissue enhanced
Detected in many
small intestine:
37.8
EPSTI1
ENSSSCG00000037572
ENSG00000133106
Epithelial stromal interaction 1
Tissue enhanced
Detected in many
small intestine:
25.4
ERAP1
ENSSSCG00000014171
ENSG00000164307
Endoplasmic reticulum aminopeptidase 1
Low tissue specificity
Detected in all
ERAP2
ENSSSCG00000027860
ENSG00000164308
Endoplasmic reticulum aminopeptidase 2
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
ETS1
ENSSSCG00000015235
ENSG00000134954
Protein C-ets-1
Tissue enhanced
Detected in many
lymphoid tissue:
101.2
FAS
ENSSSCG00000010448
ENSG00000026103
Tumor necrosis factor receptor superfamily member 6 precursor
Low tissue specificity
Detected in all
FGR
ENSSSCG00000003578
ENSG00000000938
FGR proto-oncogene, Src family tyrosine kinase
Low tissue specificity
Detected in many
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
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