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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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245 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FMNL3
ENSSSCG00000025114
ENSG00000161791
Formin like 3
Low tissue specificity
Detected in all
FOLR1
ENSSSCG00000022236
ENSG00000110195
Folate receptor alpha precursor
Tissue enhanced
Detected in all
choroid plexus:
123.7
synovial tissue:
158.6
FOXS1
ENSSSCG00000033613
ENSG00000179772
Forkhead box S1
Low tissue specificity
Detected in all
GAB3
ENSSSCG00000012824
ENSG00000160219
GRB2 associated binding protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
20.7
GCNT1
ENSSSCG00000005277
ENSG00000187210
Glucosaminyl (N-acetyl) transferase 1, core 2
Tissue enhanced
Detected in many
male glands:
50.9
GIT2
ENSSSCG00000009925
ENSG00000139436
GIT ArfGAP 2
Low tissue specificity
Detected in all
GNAI2
ENSSSCG00000011399
ENSG00000114353
Guanine nucleotide-binding protein G(i) subunit alpha-2
Tissue enriched
Detected in all
retina:
275.2
HECA
ENSSSCG00000004144
ENSG00000112406
Hdc homolog, cell cycle regulator
Low tissue specificity
Detected in all
HERC5
ENSSSCG00000030548
ENSG00000138646
HECT and RLD domain containing E3 ubiquitin protein ligase 5
Low tissue specificity
Detected in many
HERC6
ENSSSCG00000021712
ENSG00000138642
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
Low tissue specificity
Detected in many
HHEX
ENSSSCG00000036314
ENSG00000152804
Hematopoietically-expressed homeobox protein HHEX
Tissue enhanced
Detected in many
thyroid gland:
19.5
HLA-DRA
ENSSSCG00000001453
ENSG00000204287
MHC class II DR-alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
150.4
ICAM1
ENSSSCG00000013655
ENSG00000090339
Intercellular adhesion molecule 1 precursor
Tissue enhanced
Detected in many
lung:
45.5
ICAM2
ENSSSCG00000039909
ENSG00000108622
Intercellular adhesion molecule 2 precursor
Low tissue specificity
Detected in many
IFI30
ENSSSCG00000013901
ENSG00000216490
Gamma-interferon-inducible-lysosomal thiol reductase
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
ovary:
51.3
IFI35
ENSSSCG00000029763
ENSG00000068079
Interferon induced protein 35
Low tissue specificity
Detected in all
IFI44
ENSSSCG00000003763
ENSG00000137965
Interferon-induced protein 44
Low tissue specificity
Detected in many
IFI6
ENSSSCG00000034570
ENSG00000126709
Interferon alpha inducible protein 6
Tissue enhanced
Detected in many
liver:
106.7
IFIH1
ENSSSCG00000015897
ENSG00000115267
Interferon-induced helicase C domain-containing protein 1
Low tissue specificity
Detected in all
IFNGR2
ENSSSCG00000034378
ENSG00000159128
Interferon gamma receptor 2 precursor
Low tissue specificity
Detected in all
IL10RB
ENSSSCG00000036556
ENSG00000159110,ENSG00000249624
Interferon alpha/beta receptor 2
Low tissue specificity
Detected in all
IL6R
ENSSSCG00000027628
ENSG00000160712
Interleukin-6 receptor subunit alpha precursor
Tissue enhanced
Detected in many
liver:
62.2
IRF1
ENSSSCG00000014277
ENSG00000125347
Interferon regulatory factor 1
Low tissue specificity
Detected in all
IRF2
ENSSSCG00000015782
ENSG00000168310
Interferon regulatory factor 2
Low tissue specificity
Detected in all
IRF7
ENSSSCG00000012853
ENSG00000185507
Interferon regulatory factor 7
Tissue enhanced
Detected in many
small intestine:
36.4
IRF9
ENSSSCG00000002002
ENSG00000213928
Interferon regulatory factor 9
Low tissue specificity
Detected in many
ISG12(A)
ENSSSCG00000035297
ENSG00000165949
Uncharacterized protein LOC100153902
Low tissue specificity
Detected in all
ITPKB
ENSSSCG00000040100
ENSG00000143772
Inositol-trisphosphate 3-kinase B
Low tissue specificity
Detected in all
KDM7A
ENSSSCG00000016501
ENSG00000006459
Lysine demethylase 7A
Low tissue specificity
Detected in all
KIAA1551
ENSSSCG00000030616
ENSG00000174718
Uncharacterized
Low tissue specificity
Detected in all
KMO
ENSSSCG00000025686
ENSG00000117009
Kynurenine 3-monooxygenase
Tissue enhanced
Detected in many
kidney:
24.8
liver:
62.8
LASP1
ENSSSCG00000040642
ENSG00000002834
LIM and SH3 protein 1
Low tissue specificity
Detected in all
LAYN
ENSSSCG00000015022
ENSG00000204381
Layilin precursor
Tissue enhanced
Detected in many
cartilage:
29.8
pineal gland:
22.1
LGALS3BP
ENSSSCG00000036383
ENSG00000108679
Galectin 3 binding protein
Low tissue specificity
Detected in all
LITAF
ENSSSCG00000032381
ENSG00000189067
Lipopolysaccharide induced TNF factor
Tissue enhanced
Detected in all
ovary:
46.1
LPAR6
ENSSSCG00000036063
ENSG00000139679
Lysophosphatidic acid receptor 6
Low tissue specificity
Detected in all
LRRC8C
ENSSSCG00000006917
ENSG00000171488
Leucine rich repeat containing 8 VRAC subunit C
Tissue enhanced
Detected in many
cartilage:
40.4
MAN1A1
ENSSSCG00000004244
ENSG00000111885
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA
Tissue enhanced
Detected in many
choroid plexus:
46.4
MANBA
ENSSSCG00000009166
ENSG00000109323
Mannosidase beta
Low tissue specificity
Detected in all
MBNL1
ENSSSCG00000011720
ENSG00000152601
Muscleblind like splicing regulator 1
Tissue enhanced
Detected in all
skeletal muscle:
106.1
MBNL3
ENSSSCG00000012676
ENSG00000076770
Muscleblind-like protein 3
Tissue enhanced
Detected in many
liver:
71.8
male glands:
45.2
testis:
55.3
MFNG
ENSSSCG00000030209
ENSG00000100060
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in many
adipose tissue:
55.4
aorta:
31.5
MOV10
ENSSSCG00000006776
ENSG00000155363
Mov10 RISC complex RNA helicase
Low tissue specificity
Detected in many
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MS4A2
ENSSSCG00000034506
ENSG00000149534
High affinity immunoglobulin epsilon receptor subunit beta
Tissue enhanced
Detected in many
adipose tissue:
28.2
MSN
ENSSSCG00000012365
ENSG00000147065
Moesin
Low tissue specificity
Detected in all
MTSS1
ENSSSCG00000005975
ENSG00000170873
MTSS1, I-BAR domain containing
Low tissue specificity
Detected in all
MX2
ENSSSCG00000012076
ENSG00000183486
Interferon-induced GTP-binding protein Mx2
Low tissue specificity
Detected in all
MYO9B
ENSSSCG00000013876
ENSG00000099331
Myosin IXB
Low tissue specificity
Detected in all
na
ENSSSCG00000001229
MHC class I antigen 2 precursor
Low tissue specificity
Detected in all
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