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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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400 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACBD6
ENSSSCG00000015534
ENSG00000230124
Acyl-CoA binding domain containing 6
Low tissue specificity
Detected in all
ACTB
ENSSSCG00000007585
ENSG00000075624
Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed
Low tissue specificity
Detected in all
ADAM9
ENSSSCG00000015808
ENSG00000168615
ADAM metallopeptidase domain 9
Low tissue specificity
Detected in all
ADGRA3
ENSSSCG00000008753
ENSG00000152990
Adhesion G protein-coupled receptor A3
Tissue enhanced
Detected in all
cartilage:
76.4
ADPGK
ENSSSCG00000001925
ENSG00000159322
ADP dependent glucokinase
Low tissue specificity
Detected in all
AGTRAP
ENSSSCG00000022401
ENSG00000177674
Angiotensin II receptor associated protein
Low tissue specificity
Detected in all
AIDA
ENSSSCG00000010835
ENSG00000186063
Axin interactor, dorsalization associated
Low tissue specificity
Detected in all
AKR1A1
ENSSSCG00000029256
ENSG00000117448
Alcohol dehydrogenase
Low tissue specificity
Detected in all
ALG3
ENSSSCG00000021319
ENSG00000214160
ALG3, alpha-1,3- mannosyltransferase
Low tissue specificity
Detected in all
ALKBH5
ENSSSCG00000035120
ENSG00000091542
AlkB homolog 5, RNA demethylase
Low tissue specificity
Detected in all
ANKLE2
ENSSSCG00000026781
ENSG00000176915
Ankyrin repeat and LEM domain containing 2
Low tissue specificity
Detected in all
APEH
ENSSSCG00000011385
ENSG00000164062
Acylamino-acid-releasing enzyme
Tissue enhanced
Detected in all
epididymis:
63.2
APH1A
ENSSSCG00000028297
ENSG00000117362
Gamma-secretase subunit APH-1A
Low tissue specificity
Detected in all
ARL6IP6
ENSSSCG00000015868
ENSG00000177917
ADP ribosylation factor like GTPase 6 interacting protein 6
Low tissue specificity
Detected in all
ARPC5
ENSSSCG00000015560
ENSG00000162704
Actin-related protein 2/3 complex subunit 5
Low tissue specificity
Detected in all
ARRDC3
ENSSSCG00000014156
ENSG00000113369
Arrestin domain containing 3
Low tissue specificity
Detected in all
ARRDC4
ENSSSCG00000002252
ENSG00000140450
Arrestin domain containing 4
Tissue enhanced
Detected in all
lens:
48.0
ovary:
47.3
ASAH1
ENSSSCG00000006995
ENSG00000104763
N-acylsphingosine amidohydrolase 1
Tissue enhanced
Detected in all
choroid plexus:
100.9
ATF4
ENSSSCG00000000084
ENSG00000128272
Cyclic AMP-dependent transcription factor ATF-4
Tissue enhanced
Detected in all
skeletal muscle:
180.7
B3GALT4
ENSSSCG00000001503
ENSG00000235863
Beta-1,3-galactosyltransferase 4
Tissue enhanced
Detected in all
epididymis:
42.4
BAG1
ENSSSCG00000010996
ENSG00000107262
BAG family molecular chaperone regulator 1
Low tissue specificity
Detected in all
BNIP2
ENSSSCG00000004582
ENSG00000140299
BCL2 interacting protein 2
Low tissue specificity
Detected in all
BORCS6
ENSSSCG00000028788
ENSG00000196544
BLOC-1 related complex subunit 6
Low tissue specificity
Detected in all
C19orf24
ENSSSCG00000028040
ENSG00000228300
Chromosome 19 open reading frame 24
Group enriched
Detected in many
cartilage:
9.1
male glands:
34.2
ovary:
8.7
C1orf109
ENSSSCG00000039905
ENSG00000116922
Chromosome 1 open reading frame 109
Low tissue specificity
Detected in all
C1orf43
ENSSSCG00000006554
ENSG00000143612
Uncharacterized protein C1orf43 homolog
Low tissue specificity
Detected in all
C4orf46
ENSSSCG00000028492
ENSG00000205208
Chromosome 4 open reading frame 46
Tissue enhanced
Detected in all
testis:
20.0
C5orf15
ENSSSCG00000032323
ENSG00000113583
Chromosome 5 open reading frame 15
Low tissue specificity
Detected in all
CALR
ENSSSCG00000013746
ENSG00000179218
Calreticulin
Low tissue specificity
Detected in all
CAPZB
ENSSSCG00000003493
ENSG00000077549
F-actin-capping protein subunit beta
Low tissue specificity
Detected in all
CARHSP1
ENSSSCG00000026710
ENSG00000153048
Calcium regulated heat stable protein 1
Tissue enriched
Detected in all
lens:
154.8
CBFB
ENSSSCG00000033811
ENSG00000067955
Core-binding factor beta subunit
Low tissue specificity
Detected in all
CD164
ENSSSCG00000004414
ENSG00000135535
CD164 molecule
Tissue enriched
Detected in all
male glands:
185.5
CD3EAP
ENSSSCG00000020754
ENSG00000117877
CD3e molecule associated protein
Low tissue specificity
Detected in all
CD63
ENSSSCG00000000361
ENSG00000135404
CD63 molecule
Low tissue specificity
Detected in all
CDC14B
ENSSSCG00000027557
ENSG00000081377
Cell division cycle 14B
Low tissue specificity
Detected in all
CDC42EP4
ENSSSCG00000017245
ENSG00000179604
CDC42 effector protein 4
Low tissue specificity
Detected in all
CDK2AP2
ENSSSCG00000012902
ENSG00000167797
Cyclin dependent kinase 2 associated protein 2
Low tissue specificity
Detected in all
CDKN2C
ENSSSCG00000003876
ENSG00000123080
Cyclin dependent kinase inhibitor 2C
Low tissue specificity
Detected in all
CEBPG
ENSSSCG00000002867
ENSG00000153879
CCAAT/enhancer binding protein gamma
Low tissue specificity
Detected in all
CHMP2A
ENSSSCG00000029362
ENSG00000130724
Charged multivesicular body protein 2A
Low tissue specificity
Detected in all
CHRAC1
ENSSSCG00000005933
ENSG00000104472
Chromatin accessibility complex 1
Low tissue specificity
Detected in all
CIB1
ENSSSCG00000001858
ENSG00000185043
Calcium and integrin binding 1
Low tissue specificity
Detected in all
CMTM6
ENSSSCG00000038362
ENSG00000091317
CKLF like MARVEL transmembrane domain containing 6
Low tissue specificity
Detected in all
CNPPD1
ENSSSCG00000016206
ENSG00000115649
Cyclin Pas1/PHO80 domain containing 1
Low tissue specificity
Detected in all
COPZ1
ENSSSCG00000000290
ENSG00000111481
Coatomer protein complex subunit zeta 1
Tissue enhanced
Detected in all
male glands:
114.8
CPQ
ENSSSCG00000006087
ENSG00000104324
Carboxypeptidase Q precursor
Tissue enhanced
Detected in all
thyroid gland:
65.0
CSTB
ENSSSCG00000027357
ENSG00000160213
Cystatin-B
Tissue enhanced
Detected in all
mouth:
162.4
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CYP20A1
ENSSSCG00000016118
ENSG00000119004
Cytochrome P450, family 20, subfamily A, polypeptide 1
Low tissue specificity
Detected in all
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