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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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400 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DCAF12
ENSSSCG00000024384
ENSG00000198876
DDB1 and CUL4 associated factor 12
Low tissue specificity
Detected in all
DDOST
ENSSSCG00000003505
ENSG00000244038
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor
Low tissue specificity
Detected in all
DNAJB12
ENSSSCG00000010288
ENSG00000148719
DnaJ heat shock protein family (Hsp40) member B12
Low tissue specificity
Detected in all
DPAGT1
ENSSSCG00000015110
ENSG00000172269
Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
Low tissue specificity
Detected in all
DPM2
ENSSSCG00000032481
ENSG00000136908
Dolichol phosphate-mannose biosynthesis regulatory protein
Low tissue specificity
Detected in all
DYRK3
ENSSSCG00000015649
ENSG00000143479
Dual specificity tyrosine phosphorylation regulated kinase 3
Tissue enhanced
Detected in all
lens:
49.1
testis:
37.9
EEF1A1
ENSSSCG00000004489
ENSG00000156508
Elongation factor 1-alpha 1
Low tissue specificity
Detected in all
EEF1AKMT1
ENSSSCG00000031468
ENSG00000150456
EEF1A lysine methyltransferase 1
Low tissue specificity
Detected in all
EEF1B2
ENSSSCG00000016128
ENSG00000114942
Elongation factor 1-beta
Low tissue specificity
Detected in all
EEF2
ENSSSCG00000025675
ENSG00000167658
Eukaryotic translation elongation factor 2
Low tissue specificity
Detected in all
EFL1
ENSSSCG00000001792
ENSG00000140598
Elongation factor like GTPase 1
Low tissue specificity
Detected in all
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EIF1AD
ENSSSCG00000027334
ENSG00000175376
Eukaryotic translation initiation factor 1A domain containing
Low tissue specificity
Detected in all
EIF2D
ENSSSCG00000015648
ENSG00000143486
Eukaryotic translation initiation factor 2D
Low tissue specificity
Detected in all
EIF3A
ENSSSCG00000010679
ENSG00000107581
Eukaryotic translation initiation factor 3 subunit A
Low tissue specificity
Detected in all
EIF3F
ENSSSCG00000039647
ENSG00000175390
Eukaryotic translation initiation factor 3 subunit F
Low tissue specificity
Detected in all
EIF3G
ENSSSCG00000013661
ENSG00000130811
Eukaryotic translation initiation factor 3 subunit G
Low tissue specificity
Detected in all
EIF3I
ENSSSCG00000003612
ENSG00000084623
Eukaryotic translation initiation factor 3 subunit I
Low tissue specificity
Detected in all
EIF3K
ENSSSCG00000002963
ENSG00000178982
Eukaryotic translation initiation factor 3 subunit K
Low tissue specificity
Detected in all
EIF3L
ENSSSCG00000000119
ENSG00000100129
Eukaryotic translation initiation factor 3 subunit L
Low tissue specificity
Detected in all
EIF4A1
ENSSSCG00000017957
ENSG00000161960
Eukaryotic initiation factor 4A-I
Low tissue specificity
Detected in all
EIF5A
ENSSSCG00000038359
ENSG00000132507
Eukaryotic translation initiation factor 5A
Low tissue specificity
Detected in all
ELL2
ENSSSCG00000014168
ENSG00000118985
Elongation factor for RNA polymerase II 2
Tissue enhanced
Detected in all
lens:
121.3
ELOA
ENSSSCG00000025440
ENSG00000011007
Elongin A
Low tissue specificity
Detected in all
EOGT
ENSSSCG00000011504
ENSG00000163378
EGF domain-specific O-linked N-acetylglucosamine transferase precursor
Low tissue specificity
Detected in all
ERGIC1
ENSSSCG00000016988
ENSG00000113719
Endoplasmic reticulum-golgi intermediate compartment 1
Tissue enhanced
Detected in all
male glands:
91.8
ERP44
ENSSSCG00000040634
ENSG00000023318
Endoplasmic reticulum resident protein 44 precursor
Low tissue specificity
Detected in all
ESM1
ENSSSCG00000016900
ENSG00000164283
Endothelial cell specific molecule 1
Tissue enriched
Detected in many
pineal gland:
129.4
FAM120A
ENSSSCG00000008079
ENSG00000048828
Family with sequence similarity 120A
Low tissue specificity
Detected in all
FAM89A
ENSSSCG00000038765
ENSG00000182118
Family with sequence similarity 89 member A
Tissue enhanced
Detected in many
lens:
30.4
testis:
18.6
FAU
ENSSSCG00000039740
ENSG00000149806
FAU, ubiquitin like and ribosomal protein S30 fusion
Low tissue specificity
Detected in all
FBL
ENSSSCG00000030510
ENSG00000105202
Fibrillarin
Low tissue specificity
Detected in all
FKBP14
ENSSSCG00000037575
ENSG00000106080
Peptidyl-prolyl cis-trans isomerase FKBP14 precursor
Low tissue specificity
Detected in all
FNDC3A
ENSSSCG00000022159
ENSG00000102531
Fibronectin type III domain containing 3A
Low tissue specificity
Detected in all
FUCA1
ENSSSCG00000027659
ENSG00000179163
Tissue alpha-L-fucosidase precursor
Low tissue specificity
Detected in all
G3BP1
ENSSSCG00000035676
ENSG00000145907
Ras GTPase-activating protein-binding protein 1
Low tissue specificity
Detected in all
GALK1
ENSSSCG00000017203
ENSG00000108479
Galactokinase 1
Low tissue specificity
Detected in all
GALK2
ENSSSCG00000004651
ENSG00000156958
Galactokinase 2
Low tissue specificity
Detected in all
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GANAB
ENSSSCG00000030653
ENSG00000089597
Neutral alpha-glucosidase AB precursor
Low tissue specificity
Detected in all
GEMIN8
ENSSSCG00000012127
ENSG00000046647
Gem-associated protein 8
Low tissue specificity
Detected in all
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GINM1
ENSSSCG00000030067
ENSG00000055211
Glycoprotein integral membrane 1
Tissue enhanced
Detected in all
male glands:
74.3
GLA
ENSSSCG00000038423
ENSG00000102393
Alpha-galactosidase A
Tissue enhanced
Detected in all
ovary:
35.6
GLMP
ENSSSCG00000006488
ENSG00000198715
Glycosylated lysosomal membrane protein
Low tissue specificity
Detected in all
GLT8D1
ENSSSCG00000011448
ENSG00000016864
Glycosyltransferase 8 domain containing 1
Low tissue specificity
Detected in all
GNB1L
ENSSSCG00000010130
ENSG00000185838
Guanine nucleotide-binding protein subunit beta-like protein 1
Low tissue specificity
Detected in all
GNS
ENSSSCG00000023715
ENSG00000135677
Glucosamine (N-acetyl)-6-sulfatase
Low tissue specificity
Detected in all
GOLPH3L
ENSSSCG00000038558
ENSG00000143457
Golgi phosphoprotein 3 like
Tissue enhanced
Detected in all
male glands:
91.6
GORASP2
ENSSSCG00000015943
ENSG00000115806
Golgi reassembly stacking protein 2
Low tissue specificity
Detected in all
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