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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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130 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGR2
ENSSSCG00000015363
ENSG00000106541
Anterior gradient protein 2 homolog precursor
Tissue enriched
Detected in many
male glands:
443.2
AHRR
ENSSSCG00000032843
ENSG00000063438
Aryl-hydrocarbon receptor repressor
Tissue enhanced
Detected in some
mouth:
16.8
skin:
23.9
stomach:
11.8
urinary bladder:
14.5
ANKRD22
ENSSSCG00000010445
ENSG00000152766
Ankyrin repeat domain 22
Tissue enhanced
Detected in many
large intestine:
33.2
small intestine:
17.6
stomach:
15.9
ANO9
ENSSSCG00000024569
ENSG00000185101
Anoctamin 9
Tissue enhanced
Detected in many
large intestine:
25.9
skin:
20.5
small intestine:
32.6
stomach:
36.6
APOBEC1
ENSSSCG00000000668
ENSG00000111701
Apolipoprotein B mRNA editing enzyme catalytic subunit 1
Tissue enhanced
Detected in some
cornea:
11.9
large intestine:
22.0
small intestine:
8.7
upper respiratory system:
19.9
APPL2
ENSSSCG00000000841
ENSG00000136044
DCC-interacting protein 13-beta
Low tissue specificity
Detected in all
ARHGEF38
ENSSSCG00000021764
ENSG00000236699
Rho guanine nucleotide exchange factor 38
Tissue enhanced
Detected in many
epididymis:
22.1
male glands:
29.4
ATP2C2
ENSSSCG00000002671
ENSG00000064270
ATPase secretory pathway Ca2+ transporting 2
Group enriched
Detected in many
esophagus:
42.4
male glands:
129.8
B3GALT5
ENSSSCG00000038056
ENSG00000183778
Beta-1,3-galactosyltransferase 5
Tissue enhanced
Detected in all
esophagus:
40.8
large intestine:
45.5
stomach:
56.6
B3GNT2
ENSSSCG00000008374
ENSG00000170340
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Low tissue specificity
Detected in all
B3GNT5
ENSSSCG00000024393
ENSG00000176597
Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
Tissue enhanced
Detected in many
epididymis:
52.4
lens:
60.4
B3GNT6
ENSSSCG00000014874
ENSG00000198488
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6
Group enriched
Detected in many
large intestine:
24.6
stomach:
37.4
B3GNT7
ENSSSCG00000033015
ENSG00000156966
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tissue enhanced
Detected in all
cornea:
31.8
large intestine:
40.0
lens:
33.5
BCL2L14
ENSSSCG00000000623
ENSG00000121380
Apoptosis facilitator Bcl-2-like protein 14
Tissue enhanced
Detected in all
testis:
21.1
BPIFB1
ENSSSCG00000007261
ENSG00000125999
BPI fold-containing family B member 1 precursor
Group enriched
Detected in some
stomach:
169.9
upper respiratory system:
641.2
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
CAPN13
ENSSSCG00000020986
ENSG00000162949
Calpain 13
Group enriched
Detected in some
stomach:
44.5
upper respiratory system:
61.9
CAPN9
ENSSSCG00000010182
ENSG00000135773
Calpain 9
Tissue enriched
Detected in some
stomach:
51.2
CASP3
ENSSSCG00000034012
ENSG00000164305
Caspase-3
Low tissue specificity
Detected in all
CBX8
ENSSSCG00000034146
ENSG00000141570
Chromobox protein homolog 8
Low tissue specificity
Detected in all
CCL28
ENSSSCG00000016871
ENSG00000151882
C-C motif chemokine 28 precursor
Tissue enhanced
Detected in many
endometrium:
49.2
male glands:
37.9
salivary gland:
37.3
upper respiratory system:
29.0
CDKN2B
ENSSSCG00000034120
ENSG00000147883
Cyclin-dependent kinase 4 inhibitor B
Tissue enhanced
Detected in all
mouth:
21.6
small intestine:
20.9
CFTR
ENSSSCG00000016626
ENSG00000001626
Cystic fibrosis transmembrane conductance regulator
Tissue enhanced
Detected in many
large intestine:
16.2
small intestine:
43.3
CHST4
ENSSSCG00000002737
ENSG00000140835
Carbohydrate sulfotransferase 4
Tissue enhanced
Detected in all
large intestine:
44.1
stomach:
74.2
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CNNM4
ENSSSCG00000008202
ENSG00000158158
Cyclin and CBS domain divalent metal cation transport mediator 4
Tissue enhanced
Detected in all
large intestine:
40.1
COL10A1
ENSSSCG00000004436
ENSG00000123500
Collagen alpha-1(X) chain precursor
Group enriched
Detected in some
cartilage:
24.1
upper respiratory system:
90.6
COL17A1
ENSSSCG00000010607
ENSG00000065618
Collagen type XVII alpha 1 chain
Tissue enhanced
Detected in many
cornea:
150.8
skin:
41.1
CT83
ENSSSCG00000021942
ENSG00000204019
Cancer/testis antigen 83
Tissue enhanced
Detected in many
esophagus:
20.4
large intestine:
15.4
salivary gland:
19.7
testis:
12.8
upper respiratory system:
19.4
CXorf38
ENSSSCG00000012249
ENSG00000185753
Chromosome X open reading frame 38
Low tissue specificity
Detected in all
DEGS2
ENSSSCG00000002512
ENSG00000168350
Delta 4-desaturase, sphingolipid 2
Tissue enhanced
Detected in many
gallbladder:
17.3
stomach:
20.1
DMBT1
ENSSSCG00000002981
ENSG00000187908
Deleted in malignant brain tumors 1 protein precursor
Tissue enriched
Detected in some
upper respiratory system:
534.4
DUOX2
ENSSSCG00000004678
ENSG00000140279
Dual oxidase 2 precursor
Group enriched
Detected in many
gallbladder:
21.4
large intestine:
37.0
stomach:
52.0
thyroid gland:
72.5
upper respiratory system:
24.4
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
EDN2
ENSSSCG00000037856
ENSG00000127129
Endothelin 2
Tissue enhanced
Detected in some
mouth:
9.2
ovary:
22.8
stomach:
14.4
upper respiratory system:
15.7
ERICH5
ENSSSCG00000006080
ENSG00000177459
Glutamate rich 5
Group enriched
Detected in some
cornea:
89.6
lens:
86.8
ERN2
ENSSSCG00000040637
ENSG00000134398
Endoplasmic reticulum to nucleus signaling 2
Tissue enhanced
Detected in many
esophagus:
43.7
male glands:
43.9
stomach:
58.7
FAM3B
ENSSSCG00000012075
ENSG00000183844
Family with sequence similarity 3 member B
Tissue enhanced
Detected in many
gallbladder:
30.3
large intestine:
31.3
stomach:
102.7
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
FAM83B
ENSSSCG00000001483
ENSG00000168143
Family with sequence similarity 83 member B
Tissue enhanced
Detected in many
mouth:
25.6
skin:
36.7
FAM83E
ENSSSCG00000025975
ENSG00000105523
Family with sequence similarity 83 member E
Tissue enhanced
Detected in some
large intestine:
22.8
stomach:
63.6
FGFBP1
ENSSSCG00000008741
ENSG00000137440
Fibroblast growth factor binding protein 1
Tissue enhanced
Detected in some
cornea:
29.7
large intestine:
32.9
mouth:
16.6
skin:
26.2
upper respiratory system:
25.5
FRK
ENSSSCG00000004434
ENSG00000111816
Fyn related Src family tyrosine kinase
Tissue enhanced
Detected in many
male glands:
15.9
upper respiratory system:
14.2
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GCNT3
ENSSSCG00000004584
ENSG00000140297
Glucosaminyl (N-acetyl) transferase 3, mucin type
Group enriched
Detected in many
large intestine:
19.1
small intestine:
52.3
stomach:
44.3
upper respiratory system:
30.6
GIPC2
ENSSSCG00000035582
ENSG00000137960
GIPC PDZ domain containing family member 2
Low tissue specificity
Detected in all
GIPR
ENSSSCG00000021053
ENSG00000010310
Gastric inhibitory polypeptide receptor
Tissue enhanced
Detected in many
esophagus:
13.4
male glands:
10.1
stomach:
15.6
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
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