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UMAP gene cluster
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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130 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GOLM1
ENSSSCG00000010955
ENSG00000135052
Golgi membrane protein 1
Tissue enhanced
Detected in all
small intestine:
76.5
stomach:
88.5
GPA33
ENSSSCG00000006312
ENSG00000143167
Glycoprotein A33
Group enriched
Detected in some
large intestine:
55.0
small intestine:
20.7
stomach:
25.8
GPRL15
ENSSSCG00000024634
ENSG00000188373
Protein GPR15L
Tissue enhanced
Detected in some
large intestine:
118.4
lymphoid tissue:
26.5
salivary gland:
27.7
upper respiratory system:
37.9
GPX2
ENSSSCG00000002279
ENSG00000176153
Glutathione peroxidase 2
Group enriched
Detected in some
large intestine:
226.7
upper respiratory system:
96.9
GSR
ENSSSCG00000015844
ENSG00000104687
Glutathione-disulfide reductase
Tissue enhanced
Detected in all
large intestine:
60.8
GZMA
ENSSSCG00000016902
Granzyme A precursor
Group enriched
Detected in many
large intestine:
19.8
small intestine:
20.1
stomach:
9.2
HSD11B2
ENSSSCG00000002777
ENSG00000176387
Corticosteroid 11-beta-dehydrogenase isozyme 2
Group enriched
Detected in many
adrenal gland:
19.3
kidney:
52.6
large intestine:
68.6
salivary gland:
18.1
urinary bladder:
36.6
HSD17B2
ENSSSCG00000038221
ENSG00000086696
Estradiol 17-beta-dehydrogenase 2
Tissue enhanced
Detected in many
cornea:
40.1
lens:
26.6
liver:
26.1
upper respiratory system:
23.7
urinary bladder:
41.4
IL22RA1
ENSSSCG00000038848
ENSG00000142677
Interleukin 22 receptor subunit alpha 1
Tissue enhanced
Detected in some
gallbladder:
14.6
liver:
29.4
small intestine:
17.4
stomach:
17.9
INAVA
ENSSSCG00000032735
ENSG00000163362
Innate immunity activator
Tissue enhanced
Detected in many
skin:
23.2
stomach:
49.7
KCNE3
ENSSSCG00000029323
ENSG00000175538
Potassium voltage-gated channel subfamily E member 3
Tissue enhanced
Detected in many
thyroid gland:
44.7
upper respiratory system:
39.4
LIPH
ENSSSCG00000011793
ENSG00000163898
Lipase H
Tissue enhanced
Detected in many
ovary:
13.1
stomach:
28.9
LTA4H
ENSSSCG00000000891
ENSG00000111144
Leukotriene A-4 hydrolase
Low tissue specificity
Detected in all
LYZ
ENSSSCG00000000492
ENSG00000090382
Lysozyme C-3 precursor
Tissue enhanced
Detected in many
large intestine:
87.6
small intestine:
117.4
stomach:
158.7
MCU
ENSSSCG00000010290
ENSG00000156026
Mitochondrial calcium uniporter
Low tissue specificity
Detected in all
MISP
ENSSSCG00000013425
ENSG00000099812
Mitotic spindle positioning
Group enriched
Detected in some
large intestine:
83.3
small intestine:
42.0
stomach:
35.5
MKRN2OS
ENSSSCG00000011581
ENSG00000225526
MKRN2 opposite strand
Low tissue specificity
Detected in many
MMP7
ENSSSCG00000014982
ENSG00000137673
Matrix metallopeptidase 7
Tissue enriched
Detected in some
gallbladder:
136.3
MYCL
ENSSSCG00000039761
ENSG00000116990
MYCL proto-oncogene, bHLH transcription factor
Tissue enhanced
Detected in many
stomach:
21.9
upper respiratory system:
27.0
urinary bladder:
33.8
na
ENSSSCG00000000273
ENSG00000205352
Proline-rich protein 13 isoform 2
Tissue enhanced
Detected in all
large intestine:
116.3
small intestine:
102.0
stomach:
168.8
na
ENSSSCG00000004573
Tissue enhanced
Detected in many
male glands:
16.0
small intestine:
16.0
stomach:
43.9
upper respiratory system:
15.6
na
ENSSSCG00000004666
ENSG00000137767,ENSG00000260170
Sulfide:quinone oxidoreductase, mitochondrial
Tissue enhanced
Detected in all
large intestine:
94.8
na
ENSSSCG00000007384
ENSG00000175121
Group enriched
Detected in some
large intestine:
9.9
mouth:
9.7
na
ENSSSCG00000011850
ENSG00000145113
Mucin-4 precursor
Tissue enriched
Detected in many
upper respiratory system:
155.9
na
ENSSSCG00000012006
Low tissue specificity
Detected in many
na
ENSSSCG00000013902
ENSG00000284797
Tissue enhanced
Detected in some
endometrium:
18.0
fallopian tube:
17.6
large intestine:
20.0
small intestine:
23.5
stomach:
28.3
na
ENSSSCG00000024029
Tissue enhanced
Detected in many
large intestine:
14.4
liver:
21.5
skin:
11.6
na
ENSSSCG00000024930
Tissue enriched
Detected in some
testis:
77.7
na
ENSSSCG00000028217
Tissue enriched
Detected in many
testis:
70.7
na
ENSSSCG00000030269
ENSG00000167080
Tissue enhanced
Detected in many
male glands:
51.7
mesothelial tissue:
31.5
upper respiratory system:
41.2
na
ENSSSCG00000030492
Tissue enhanced
Detected in many
cornea:
37.6
large intestine:
23.0
na
ENSSSCG00000031706
Tissue enhanced
Detected in many
large intestine:
20.9
male glands:
30.3
na
ENSSSCG00000031859
Tissue enhanced
Detected in some
large intestine:
1.4
lymphoid tissue:
1.2
small intestine:
1.5
stomach:
1.4
na
ENSSSCG00000033637
ENSG00000114529
Tissue enhanced
Detected in many
large intestine:
7.0
liver:
6.5
stomach:
8.5
upper respiratory system:
6.7
na
ENSSSCG00000033737
Tissue enhanced
Detected in some
esophagus:
3.8
salivary gland:
3.4
skin:
5.0
stomach:
3.0
testis:
3.0
na
ENSSSCG00000036006
Low tissue specificity
Detected in many
na
ENSSSCG00000036274
ENSG00000240224,ENSG00000243135,ENSG00000244474
UDP glucuronosyltransferase 1 family, polypeptide A6 precursor
Tissue enhanced
Detected in all
large intestine:
61.0
liver:
75.9
na
ENSSSCG00000038187
ENSG00000106392
Low tissue specificity
Detected in all
NOX1
ENSSSCG00000012485
ENSG00000007952
NADPH oxidase 1
Tissue enriched
Detected in some
large intestine:
55.8
NOXO1
ENSSSCG00000008034
ENSG00000196408
NADPH oxidase organizer 1
Tissue enhanced
Detected in some
gallbladder:
11.3
large intestine:
21.9
stomach:
33.0
OASL
ENSSSCG00000009921
ENSG00000135114
2'-5'-oligoadenylate synthase-like protein
Tissue enhanced
Detected in many
small intestine:
33.7
upper respiratory system:
11.2
OLFM4
ENSSSCG00000009444
ENSG00000102837
Olfactomedin 4
Group enriched
Detected in some
large intestine:
266.2
stomach:
97.8
upper respiratory system:
106.9
PAQR5
ENSSSCG00000004968
ENSG00000137819
Progestin and adipoQ receptor family member 5
Tissue enhanced
Detected in many
adrenal gland:
46.4
kidney:
53.5
lens:
30.5
testis:
84.8
PARM1
ENSSSCG00000008966
ENSG00000169116
Prostate androgen-regulated mucin-like protein 1 precursor
Tissue enhanced
Detected in all
pineal gland:
103.9
PGLYRP3
ENSSSCG00000027322
ENSG00000159527
Peptidoglycan recognition protein 3 precursor
Tissue enhanced
Detected in some
cornea:
11.7
large intestine:
9.4
mouth:
15.6
skin:
9.4
PGLYRP4
ENSSSCG00000006587
ENSG00000163218
Peptidoglycan recognition protein 4
Tissue enhanced
Detected in all
mouth:
22.8
PIGR
ENSSSCG00000015657
ENSG00000162896
Polymeric immunoglobulin receptor precursor
Tissue enhanced
Detected in some
large intestine:
90.9
small intestine:
256.4
stomach:
136.2
upper respiratory system:
337.1
PLA2G4F
ENSSSCG00000004732
ENSG00000168907
Phospholipase A2 group IVF
Tissue enriched
Detected in some
skin:
56.0
PLS1
ENSSSCG00000011680
ENSG00000120756
Plastin 1
Tissue enhanced
Detected in many
endometrium:
44.1
large intestine:
47.3
small intestine:
32.7
stomach:
29.6
POF1B
ENSSSCG00000012462
ENSG00000124429
POF1B, actin binding protein
Tissue enhanced
Detected in some
cornea:
20.6
large intestine:
32.9
small intestine:
16.4
stomach:
27.4
upper respiratory system:
14.5
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