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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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160 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A1CF
ENSSSCG00000010431
ENSG00000148584
APOBEC1 complementation factor
Tissue enriched
Detected in some
liver:
99.7
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
ABCC2
ENSSSCG00000010543
ENSG00000023839
ATP binding cassette subfamily C member 2
Group enriched
Detected in some
kidney:
33.8
liver:
71.6
ABCC6
ENSSSCG00000007873
ENSG00000091262
ATP binding cassette subfamily C member 6
Tissue enriched
Detected in some
liver:
71.9
ABCG5
ENSSSCG00000035912
ENSG00000138075
ATP binding cassette subfamily G member 5
Group enriched
Detected in some
liver:
30.9
small intestine:
12.6
AGMAT
ENSSSCG00000003463
ENSG00000116771
Agmatinase
Group enriched
Detected in many
kidney:
49.3
liver:
67.0
small intestine:
18.0
AKR1E2
ENSSSCG00000036941
ENSG00000165568
1,5-anhydro-D-fructose reductase
Tissue enriched
Detected in many
kidney:
93.3
AKR7A2
ENSSSCG00000003491
ENSG00000053371,ENSG00000162482
Aflatoxin B1 aldehyde reductase member 2
Tissue enhanced
Detected in all
kidney:
78.9
liver:
51.0
ALDH1B1
ENSSSCG00000005361
ENSG00000137124
Aldehyde dehydrogenase 1 family member B1
Tissue enhanced
Detected in many
kidney:
70.6
ALDOB
ENSSSCG00000038300
ENSG00000136872
Aldolase, fructose-bisphosphate B
Group enriched
Detected in some
kidney:
156.9
liver:
172.6
ANKRD55
ENSSSCG00000016917
ENSG00000164512
Ankyrin repeat domain 55
Tissue enhanced
Detected in many
male glands:
29.8
salivary gland:
32.9
APOB
ENSSSCG00000008595
ENSG00000084674
Apolipoprotein B-100
Tissue enriched
Detected in some
liver:
207.3
APOC3
ENSSSCG00000015069
ENSG00000110245
Apolipoprotein C-III
Tissue enriched
Detected in some
liver:
814.1
AS3MT
ENSSSCG00000010592
ENSG00000214435
Arsenite methyltransferase
Tissue enhanced
Detected in all
liver:
61.5
ASS1
ENSSSCG00000005701
ENSG00000130707
Argininosuccinate synthase 1
Group enriched
Detected in many
kidney:
136.1
liver:
198.2
ATP13A5
ENSSSCG00000026260
ENSG00000187527
ATPase 13A5
Tissue enhanced
Detected in some
breast:
17.3
esophagus:
14.2
salivary gland:
32.5
upper respiratory system:
24.4
BCO2
ENSSSCG00000015039
ENSG00000197580
Beta-carotene oxygenase 2
Tissue enriched
Detected in many
liver:
70.3
BPIFA1
ENSSSCG00000007260
ENSG00000198183
BPI fold-containing family A member 1 precursor
Tissue enriched
Detected in some
upper respiratory system:
1802.9
BPIFB2
ENSSSCG00000029714
ENSG00000078898
BPI fold-containing family B member 2 precursor
Tissue enriched
Detected in some
esophagus:
219.7
BPIFB6
ENSSSCG00000025052
ENSG00000167104
BPI fold containing family B member 6
Tissue enriched
Detected in some
esophagus:
65.1
BRICD5
ENSSSCG00000008045
ENSG00000182685
BRICHOS domain containing 5
Tissue enriched
Detected in some
salivary gland:
25.5
C4BPB
ENSSSCG00000015661
ENSG00000123843
Complement component 4 binding protein beta
Group enriched
Detected in all
liver:
53.7
small intestine:
17.1
C9
ENSSSCG00000016856
ENSG00000113600
Complement component C9 precursor
Tissue enriched
Detected in some
liver:
150.1
CAPN14
ENSSSCG00000024781
ENSG00000214711
Calpain 14
Tissue enhanced
Detected in some
cornea:
6.3
ductus deferens:
3.2
upper respiratory system:
11.3
CBR1
ENSSSCG00000031111
ENSG00000159228
Carbonyl reductase [NADPH] 1
Group enriched
Detected in some
breast:
86.7
cartilage:
22.4
esophagus:
50.2
salivary gland:
34.5
CES3
ENSSSCG00000024476
ENSG00000172828
Carboxylesterase 3 precursor
Tissue enhanced
Detected in many
epididymis:
32.4
liver:
96.5
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CHIA
ENSSSCG00000023706
ENSG00000134216
Acidic mammalian chitinase precursor
Tissue enriched
Detected in many
breast:
82.1
CIDEB
ENSSSCG00000001989
ENSG00000136305
Cell death activator CIDE-B
Tissue enhanced
Detected in some
liver:
67.0
small intestine:
23.1
CLDN22
ENSSSCG00000027901
Claudin-22
Group enriched
Detected in many
endometrium:
20.8
esophagus:
15.0
male glands:
30.8
salivary gland:
47.0
upper respiratory system:
24.4
CPS1
ENSSSCG00000016159
ENSG00000021826
Carbamoyl-phosphate synthase 1
Tissue enriched
Detected in some
liver:
151.7
CREB3L3
ENSSSCG00000013501
ENSG00000060566
CAMP responsive element binding protein 3 like 3
Tissue enriched
Detected in some
liver:
84.3
CRISP3
ENSSSCG00000024347
ENSG00000096006
Cysteine rich secretory protein 3
Group enriched
Detected in some
male glands:
265.0
upper respiratory system:
115.5
CTH
ENSSSCG00000003789
ENSG00000116761
Cystathionine gamma-lyase
Group enriched
Detected in many
kidney:
30.9
liver:
88.3
CYP1A1
ENSSSCG00000001906
ENSG00000140465
Cytochrome P450 1A1
Tissue enriched
Detected in many
liver:
54.7
CYP2A19
ENSSSCG00000002993
ENSG00000197838,ENSG00000255974
Cytochrome P450 2A19
Group enriched
Detected in many
kidney:
186.8
liver:
187.0
upper respiratory system:
177.8
CYP2F1
ENSSSCG00000002994
ENSG00000197446
Cytochrome P450 family 2 subfamily F member 1
Tissue enriched
Detected in many
upper respiratory system:
68.0
DMRT3
ENSSSCG00000040481
ENSG00000064218
Doublesex and mab-3 related transcription factor 3
Group enriched
Detected in some
choroid plexus:
11.3
salivary gland:
28.4
upper respiratory system:
21.9
EHHADH
ENSSSCG00000040296
ENSG00000113790
Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase
Group enriched
Detected in all
kidney:
52.9
liver:
89.3
F3
ENSSSCG00000022447
ENSG00000117525
Tissue factor
Tissue enhanced
Detected in all
cornea:
64.5
ovary:
111.0
upper respiratory system:
53.4
FGFR4
ENSSSCG00000014047
ENSG00000160867
Fibroblast growth factor receptor 4
Tissue enhanced
Detected in many
gallbladder:
25.1
liver:
32.3
lymphoid tissue:
24.0
FMO3
ENSSSCG00000023472
ENSG00000007933
Flavin containing monooxygenase 3
Tissue enhanced
Detected in many
liver:
20.8
upper respiratory system:
18.2
FMO5
ENSSSCG00000006702
ENSG00000131781
Flavin containing monooxygenase 5
Tissue enhanced
Detected in all
breast:
31.0
liver:
67.0
lung:
32.1
FOXI2
ENSSSCG00000010752
ENSG00000186766
Forkhead box I2
Group enriched
Detected in some
mouth:
2.7
salivary gland:
10.9
upper respiratory system:
6.9
FRMD1
ENSSSCG00000004017
ENSG00000153303
FERM domain containing 1
Group enriched
Detected in many
gallbladder:
17.9
kidney:
49.5
testis:
53.6
GBA3
ENSSSCG00000008754
Glucosylceramidase beta 3 (gene/pseudogene)
Tissue enhanced
Detected in many
kidney:
24.2
liver:
13.8
small intestine:
24.3
GLYCTK
ENSSSCG00000011432
ENSG00000168237
Glycerate kinase
Group enriched
Detected in many
kidney:
25.0
liver:
55.7
GSTA1
ENSSSCG00000002623
ENSG00000182793,ENSG00000243955,ENSG00000244067
Tissue enhanced
Detected in many
liver:
176.9
male glands:
65.1
ovary:
103.3
small intestine:
67.1
GSTO1
ENSSSCG00000022351
ENSG00000148834
Glutathione S-transferase omega-1
Tissue enhanced
Detected in many
adrenal gland:
43.6
liver:
46.3
HABP2
ENSSSCG00000010639
ENSG00000148702
Hyaluronan-binding protein 2
Tissue enriched
Detected in some
liver:
108.9
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