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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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160 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HDHD3
ENSSSCG00000039861
ENSG00000119431
Haloacid dehalogenase like hydrolase domain containing 3
Tissue enhanced
Detected in all
kidney:
27.6
HHLA2
ENSSSCG00000027275
ENSG00000114455
HERV-H LTR-associating 2
Group enriched
Detected in all
kidney:
61.9
large intestine:
31.9
liver:
58.9
small intestine:
46.3
IFNLR1
ENSSSCG00000032860
ENSG00000185436
Interferon lambda receptor 1
Tissue enhanced
Detected in all
liver:
21.9
IRX2
ENSSSCG00000032074
ENSG00000170561
Iroquois homeobox 2
Tissue enhanced
Detected in many
breast:
24.7
salivary gland:
26.6
KHK
ENSSSCG00000008556
ENSG00000138030
Ketohexokinase
Tissue enhanced
Detected in all
liver:
63.4
small intestine:
45.8
KNG1
ENSSSCG00000011802
ENSG00000113889
Kininogen 1
Tissue enriched
Detected in many
liver:
179.2
KRT23
ENSSSCG00000024067
ENSG00000108244
Keratin 23
Group enriched
Detected in many
male glands:
46.0
salivary gland:
55.0
upper respiratory system:
26.1
LARP1B
ENSSSCG00000034280
ENSG00000138709
La ribonucleoprotein domain family member 1B
Tissue enhanced
Detected in all
liver:
44.3
testis:
67.6
LCN1
ENSSSCG00000035964
ENSG00000160349
Lipocalin-1 precursor
Group enriched
Detected in some
esophagus:
521.6
upper respiratory system:
1195.4
LGALS13
ENSSSCG00000002983
ENSG00000105198,ENSG00000105205,ENSG00000249861
Galactoside-binding soluble lectin 13
Tissue enriched
Detected in some
upper respiratory system:
70.8
LIPC
ENSSSCG00000004596
ENSG00000166035
Hepatic triacylglycerol lipase precursor
Group enriched
Detected in all
liver:
58.1
small intestine:
22.1
LMAN1L
ENSSSCG00000001899
ENSG00000140506
Lectin, mannose binding 1 like
Group enriched
Detected in some
esophagus:
79.5
male glands:
267.8
salivary gland:
90.9
LPO
ENSSSCG00000017636
ENSG00000167419
Lactoperoxidase
Group enriched
Detected in many
esophagus:
97.1
salivary gland:
80.3
LTF
ENSSSCG00000029879
ENSG00000012223
Lactotransferrin precursor
Group enriched
Detected in many
epididymis:
127.0
upper respiratory system:
186.6
MOGAT1
ENSSSCG00000016225
ENSG00000124003
Monoacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in many
liver:
46.2
small intestine:
16.4
MRTO4
ENSSSCG00000034814
ENSG00000053372
MRNA turnover protein 4 homolog
Low tissue specificity
Detected in all
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
MTTP
ENSSSCG00000009179
ENSG00000138823
Microsomal triglyceride transfer protein large subunit precursor
Group enriched
Detected in some
liver:
71.4
small intestine:
24.0
MYRFL
ENSSSCG00000023936
ENSG00000166268
Myelin regulatory factor-like
Tissue enhanced
Detected in all
small intestine:
29.4
na
ENSSSCG00000000659
Group enriched
Detected in some
liver:
16.2
upper respiratory system:
40.4
na
ENSSSCG00000002810
Tissue enhanced
Detected in some
breast:
3.8
esophagus:
5.2
upper respiratory system:
5.2
na
ENSSSCG00000002825
ENSG00000198848
Liver carboxylesterase precursor
Tissue enriched
Detected in many
liver:
163.5
na
ENSSSCG00000005638
Neutrophil gelatinase-associated lipocalin precursor
Tissue enhanced
Detected in all
cornea:
148.2
dura mater:
60.0
upper respiratory system:
120.1
na
ENSSSCG00000007262
Long palate lung and nasal epithelium protein 5 precursor
Tissue enriched
Detected in some
upper respiratory system:
323.9
na
ENSSSCG00000009263
Alpha-S2-casein precursor
Tissue enriched
Detected in single
salivary gland:
437.3
na
ENSSSCG00000010056
ENSG00000100031,ENSG00000133475
Glutathione hydrolase 1 proenzyme
Group enriched
Detected in many
ductus deferens:
25.6
epididymis:
73.0
kidney:
56.0
lymphoid tissue:
31.7
ovary:
85.8
na
ENSSSCG00000010610
ENSG00000148834
Group enriched
Detected in many
adrenal gland:
19.1
liver:
34.1
small intestine:
8.7
testis:
9.2
na
ENSSSCG00000010718
Tissue enhanced
Detected in some
cornea:
7.4
salivary gland:
9.4
testis:
3.9
na
ENSSSCG00000012998
Tissue enhanced
Detected in some
lymphoid tissue:
2.0
upper respiratory system:
4.2
na
ENSSSCG00000015068
Group enriched
Detected in all
liver:
28.4
small intestine:
21.2
na
ENSSSCG00000016093
Aldehyde oxidase 2
Tissue enriched
Detected in some
upper respiratory system:
70.1
na
ENSSSCG00000020706
ENSG00000159228
Carbonyl reductase
Tissue enhanced
Detected in all
liver:
69.0
male glands:
59.8
testis:
86.1
na
ENSSSCG00000022724
Group enriched
Detected in some
liver:
28.2
small intestine:
18.1
na
ENSSSCG00000022759
Tissue enhanced
Detected in some
kidney:
15.2
liver:
38.6
lung:
10.1
upper respiratory system:
19.3
na
ENSSSCG00000024911
Tissue enriched
Detected in many
liver:
350.1
na
ENSSSCG00000027998
Tissue enriched
Detected in many
salivary gland:
945.5
na
ENSSSCG00000028627
Tissue enriched
Detected in some
upper respiratory system:
103.5
na
ENSSSCG00000030362
Tissue enhanced
Detected in all
choroid plexus:
51.3
liver:
58.3
na
ENSSSCG00000031087
Tissue enhanced
Detected in some
male glands:
46.7
salivary gland:
151.4
upper respiratory system:
148.7
na
ENSSSCG00000031191
Tissue enhanced
Detected in many
esophagus:
7.4
male glands:
10.8
salivary gland:
11.6
na
ENSSSCG00000031246
Tissue enhanced
Detected in many
liver:
28.1
na
ENSSSCG00000032209
Tissue enhanced
Detected in some
epididymis:
3.3
liver:
9.7
small intestine:
4.2
na
ENSSSCG00000032922
ENSG00000172824
Tissue enhanced
Detected in some
epididymis:
13.0
liver:
16.9
na
ENSSSCG00000033610
Group enriched
Detected in some
esophagus:
87.0
male glands:
118.0
upper respiratory system:
309.0
na
ENSSSCG00000033790
Tissue enhanced
Detected in all
liver:
57.1
na
ENSSSCG00000034000
Group enriched
Detected in some
esophagus:
8.9
male glands:
25.0
na
ENSSSCG00000034089
Tissue enhanced
Detected in some
adipose tissue:
7.4
esophagus:
20.0
upper respiratory system:
8.9
na
ENSSSCG00000034371
Tissue enhanced
Detected in many
salivary gland:
100.6
upper respiratory system:
69.5
na
ENSSSCG00000034639
ENSG00000257335
Group enriched
Detected in some
liver:
30.3
ovary:
27.8
small intestine:
71.2
na
ENSSSCG00000035033
ENSG00000159763
Group enriched
Detected in some
salivary gland:
297.8
upper respiratory system:
391.2
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