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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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29 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGER
ENSSSCG00000001437
ENSG00000204305
Advanced glycosylation end product-specific receptor precursor
Tissue enriched
Detected in some
lung:
115.4
AMHR2
ENSSSCG00000000271
ENSG00000135409
Anti-Muellerian hormone type-2 receptor precursor
Tissue enriched
Detected in many
thyroid gland:
58.3
C14orf39
ENSSSCG00000005085
ENSG00000179008
Chromosome 14 open reading frame 39
Tissue enhanced
Detected in many
pituitary gland:
21.8
retina:
16.6
testis:
14.7
thyroid gland:
67.1
CNTD2
ENSSSCG00000002990
ENSG00000105219
Cyclin N-terminal domain containing 2
Tissue enhanced
Detected in many
male glands:
10.0
thyroid gland:
18.8
FOXE1
ENSSSCG00000005369
ENSG00000178919
Forkhead box E1
Tissue enriched
Detected in some
thyroid gland:
117.2
GP1BA
ENSSSCG00000017908
ENSG00000185245
Glycoprotein Ib platelet alpha subunit
Tissue enhanced
Detected in some
epididymis:
9.6
fallopian tube:
11.7
thyroid gland:
37.5
HOXB8
ENSSSCG00000017537
ENSG00000120068
Homeobox B8
Tissue enhanced
Detected in many
epididymis:
62.0
male glands:
53.0
na
ENSSSCG00000026512
ENSG00000110680
Calcitonin gene-related peptide 2 precursor
Tissue enriched
Detected in single
thyroid gland:
433.0
na
ENSSSCG00000031613
Tissue enhanced
Detected in single
esophagus:
2.0
na
ENSSSCG00000032124
Group enriched
Detected in some
male glands:
8.9
salivary gland:
6.4
thyroid gland:
22.9
na
ENSSSCG00000032205
Tissue enhanced
Detected in some
lung:
9.7
penis:
11.0
synovial tissue:
14.1
urinary bladder:
7.4
na
ENSSSCG00000033092
Tissue enhanced
Detected in some
ductus deferens:
2.2
thyroid gland:
1.3
na
ENSSSCG00000033183
Tissue enhanced
Detected in some
bone marrow:
3.3
dura mater:
5.2
lung:
10.2
ovary:
3.7
na
ENSSSCG00000033837
Tissue enhanced
Detected in some
male glands:
11.5
thyroid gland:
11.6
upper respiratory system:
4.4
na
ENSSSCG00000040098
ENSG00000172005
Tissue enhanced
Detected in some
dura mater:
16.1
lung:
13.5
thyroid gland:
6.2
na
ENSSSCG00000040350
Tissue enhanced
Detected in some
adipose tissue:
2.7
lung:
4.4
na
ENSSSCG00000040630
Tissue enhanced
Detected in some
brain:
2.7
thyroid gland:
8.7
NKX2-1
ENSSSCG00000001945
ENSG00000136352
Homeobox protein Nkx-2.1 isoform 2
Group enriched
Detected in some
lung:
22.4
thyroid gland:
86.5
SCGB3A2
ENSSSCG00000024111
ENSG00000164265
Secretoglobin family 3A member 2
Group enriched
Detected in some
lung:
110.2
thyroid gland:
192.7
SFTPA1
ENSSSCG00000010336
ENSG00000122852,ENSG00000185303
Pulmonary surfactant-associated protein A precursor
Tissue enriched
Detected in some
lung:
264.6
SFTPB
ENSSSCG00000008229
ENSG00000168878
Pulmonary surfactant-associated protein B precursor
Tissue enriched
Detected in some
lung:
227.0
SFTPC
ENSSSCG00000009619
ENSG00000168484
Pulmonary surfactant-associated protein C
Tissue enriched
Detected in some
lung:
321.0
SIX6
ENSSSCG00000005086
ENSG00000184302
SIX homeobox 6
Group enriched
Detected in some
pituitary gland:
27.9
retina:
15.9
thyroid gland:
36.8
SLC15A5
ENSSSCG00000000598
ENSG00000188991
Solute carrier family 15 member 5
Tissue enhanced
Detected in some
thyroid gland:
9.1
SLC34A2
ENSSSCG00000008758
ENSG00000157765
Sodium-dependent phosphate transport protein 2B
Tissue enriched
Detected in many
lung:
93.5
TAAR9
ENSSSCG00000004189
ENSG00000237110
Trace amine associated receptor 9 (gene/pseudogene)
Tissue enhanced
Detected in some
large intestine:
1.4
lung:
5.8
testis:
3.4
TBX4
ENSSSCG00000022980
ENSG00000121075
T-box transcription factor TBX4
Tissue enhanced
Detected in many
cartilage:
44.1
lung:
21.4
penis:
14.5
urinary bladder:
19.8
TG
ENSSSCG00000005948
ENSG00000042832
Thyroglobulin precursor
Tissue enriched
Detected in some
thyroid gland:
1006.8
TPO
ENSSSCG00000033193
ENSG00000115705
Thyroid peroxidase
Tissue enriched
Detected in some
thyroid gland:
355.8
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