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UMAP gene cluster
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Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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161 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADGRV1
ENSSSCG00000035025
ENSG00000164199
Adhesion G protein-coupled receptor V1
Tissue enhanced
Detected in many
choroid plexus:
71.4
pineal gland:
18.8
retina:
25.8
ANKRD45
ENSSSCG00000015491
ENSG00000183831
Ankyrin repeat domain 45
Tissue enhanced
Detected in many
choroid plexus:
39.3
testis:
39.8
AZIN2
ENSSSCG00000003619
ENSG00000142920
Antizyme inhibitor 2
Tissue enriched
Detected in many
testis:
52.3
BBS2
ENSSSCG00000025417
ENSG00000125124
Bardet-Biedl syndrome 2
Low tissue specificity
Detected in all
BBS4
ENSSSCG00000001924
ENSG00000140463
Bardet-Biedl syndrome 4 protein
Low tissue specificity
Detected in all
C15orf65
ENSSSCG00000032854
ENSG00000261652
Chromosome 15 open reading frame 65
Tissue enriched
Detected in some
testis:
31.2
C20orf96
ENSSSCG00000007212
ENSG00000196476
Chromosome 20 open reading frame 96
Tissue enriched
Detected in many
choroid plexus:
73.9
C21orf62
ENSSSCG00000012038
ENSG00000205929
Uncharacterized protein C21orf62 homolog precursor
Tissue enriched
Detected in some
choroid plexus:
59.5
C5orf42
ENSSSCG00000016843
ENSG00000197603
Chromosome 5 open reading frame 42
Low tissue specificity
Detected in all
C5orf49
ENSSSCG00000017098
ENSG00000215217
Chromosome 5 open reading frame 49
Tissue enhanced
Detected in many
brain:
21.5
testis:
26.3
upper respiratory system:
33.7
C6orf163
ENSSSCG00000004301
ENSG00000203872
Chromosome 6 open reading frame 163
Tissue enhanced
Detected in many
pituitary gland:
18.2
testis:
39.6
CAPS2
ENSSSCG00000000517
ENSG00000180881
Calcyphosine 2
Tissue enhanced
Detected in many
brain:
24.7
fallopian tube:
18.0
pineal gland:
13.8
pituitary gland:
13.9
CASC1
ENSSSCG00000040550
ENSG00000118307
Cancer susceptibility 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
CCDC148
ENSSSCG00000015876
ENSG00000153237
Coiled-coil domain containing 148
Tissue enhanced
Detected in many
choroid plexus:
20.5
kidney:
20.6
CCDC171
ENSSSCG00000005182
ENSG00000164989
Coiled-coil domain containing 171
Group enriched
Detected in many
fallopian tube:
10.0
testis:
39.7
CCDC181
ENSSSCG00000028804
ENSG00000117477
Coiled-coil domain-containing protein 181
Tissue enhanced
Detected in many
choroid plexus:
27.5
pineal gland:
39.1
pituitary gland:
27.4
retina:
33.1
CCDC91
ENSSSCG00000024232
ENSG00000123106
Coiled-coil domain-containing protein 91
Low tissue specificity
Detected in all
CDKL2
ENSSSCG00000008970
ENSG00000138769
Cyclin dependent kinase like 2
Tissue enhanced
Detected in many
testis:
32.4
thyroid gland:
19.5
CEP112
ENSSSCG00000023992
ENSG00000154240
Centrosomal protein 112
Low tissue specificity
Detected in all
CEP126
ENSSSCG00000014979
ENSG00000110318
Centrosomal protein 126
Tissue enhanced
Detected in many
fallopian tube:
48.2
testis:
40.2
CLUAP1
ENSSSCG00000007955
ENSG00000103351
Clusterin-associated protein 1
Low tissue specificity
Detected in all
CLYBL
ENSSSCG00000009519
ENSG00000125246
Citrate lyase beta like
Tissue enhanced
Detected in all
choroid plexus:
31.8
CRB2
ENSSSCG00000005584
ENSG00000148204
Crumbs 2, cell polarity complex component
Tissue enhanced
Detected in some
adipose tissue:
22.8
cornea:
11.4
mesothelial tissue:
22.3
CYB5D2
ENSSSCG00000017876
ENSG00000167740
Cytochrome b5 domain containing 2
Low tissue specificity
Detected in all
DCDC2
ENSSSCG00000001085
ENSG00000146038
Doublecortin domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
29.7
fallopian tube:
33.3
kidney:
30.9
DHRS12
ENSSSCG00000033483
ENSG00000102796
Dehydrogenase/reductase 12
Tissue enhanced
Detected in all
adrenal gland:
27.9
DNAAF4
ENSSSCG00000004608
ENSG00000256061
Dynein axonemal assembly factor 4
Tissue enhanced
Detected in many
lens:
23.0
testis:
23.0
DPCD
ENSSSCG00000010565
ENSG00000166171
Deleted in primary ciliary dyskinesia homolog (mouse)
Tissue enhanced
Detected in all
pineal gland:
63.5
DYNC2LI1
ENSSSCG00000038383
ENSG00000138036
Dynein cytoplasmic 2 light intermediate chain 1
Low tissue specificity
Detected in all
E2F5
ENSSSCG00000006145
ENSG00000133740
E2F transcription factor 5
Tissue enhanced
Detected in many
male glands:
28.1
EFCAB7
ENSSSCG00000003814
ENSG00000203965
EF-hand calcium binding domain 7
Low tissue specificity
Detected in all
FAM186B
ENSSSCG00000000205
ENSG00000135436
Family with sequence similarity 186 member B
Group enriched
Detected in all
epididymis:
9.8
testis:
35.7
FBXL15
ENSSSCG00000038504
ENSG00000107872
F-box and leucine rich repeat protein 15
Low tissue specificity
Detected in all
FBXL2
ENSSSCG00000039802
ENSG00000153558
F-box and leucine rich repeat protein 2
Tissue enhanced
Detected in many
lens:
18.6
FBXO16
ENSSSCG00000009678
ENSG00000214050
F-box protein 16
Tissue enhanced
Detected in many
epididymis:
27.9
FBXO9
ENSSSCG00000002629
ENSG00000112146
F-box only protein 9
Low tissue specificity
Detected in all
FRAS1
ENSSSCG00000008991
ENSG00000138759
Fraser extracellular matrix complex subunit 1
Tissue enhanced
Detected in many
heart:
40.1
FSIP1
ENSSSCG00000040418
ENSG00000150667
Fibrous sheath interacting protein 1
Tissue enhanced
Detected in many
choroid plexus:
12.4
fallopian tube:
18.2
testis:
12.0
IFT122
ENSSSCG00000011589
ENSG00000163913
Intraflagellar transport 122
Low tissue specificity
Detected in all
IFT22
ENSSSCG00000007679
ENSG00000128581
Intraflagellar transport 22
Low tissue specificity
Detected in all
IFT74
ENSSSCG00000005124
ENSG00000096872
Intraflagellar transport 74
Tissue enhanced
Detected in all
testis:
31.5
IFT80
ENSSSCG00000011733
ENSG00000068885
Intraflagellar transport 80
Low tissue specificity
Detected in all
IFT81
ENSSSCG00000009818
ENSG00000122970
Intraflagellar transport 81
Low tissue specificity
Detected in all
INTU
ENSSSCG00000009079
ENSG00000164066
Inturned planar cell polarity protein
Tissue enhanced
Detected in many
choroid plexus:
20.6
IQCC
ENSSSCG00000003610
ENSG00000160051
IQ motif containing C
Low tissue specificity
Detected in all
IQCK
ENSSSCG00000034720
ENSG00000174628
IQ motif containing K
Tissue enhanced
Detected in many
lens:
35.0
testis:
23.6
IRAK1BP1
ENSSSCG00000004472
ENSG00000146243
Interleukin 1 receptor associated kinase 1 binding protein 1
Tissue enhanced
Detected in many
testis:
21.1
IZUMO2
ENSSSCG00000003207
ENSG00000161652
IZUMO family member 2
Tissue enhanced
Detected in many
testis:
28.4
KATNB1
ENSSSCG00000002813
ENSG00000140854
Katanin regulatory subunit B1
Tissue enhanced
Detected in all
testis:
44.4
KCNH8
ENSSSCG00000011204
ENSG00000183960
Potassium voltage-gated channel subfamily H member 8
Tissue enhanced
Detected in some
brain:
9.7
choroid plexus:
8.2
pituitary gland:
18.3
upper respiratory system:
7.2
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