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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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161 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KNDC1
ENSSSCG00000010770
ENSG00000171798
Kinase non-catalytic C-lobe domain containing 1
Tissue enhanced
Detected in many
brain:
14.7
epididymis:
48.0
L3HYPDH
ENSSSCG00000037854
ENSG00000126790
Trans-L-3-hydroxyproline dehydratase
Low tissue specificity
Detected in all
LCA5
ENSSSCG00000004469
ENSG00000135338
LCA5, lebercilin
Tissue enhanced
Detected in many
choroid plexus:
63.5
fallopian tube:
23.4
LIPK
ENSSSCG00000010442
ENSG00000204021
Lipase family member K
Tissue enhanced
Detected in many
epididymis:
14.1
skin:
8.9
LRRC9
ENSSSCG00000005081
ENSG00000131951
Leucine rich repeat containing 9
Tissue enhanced
Detected in some
choroid plexus:
41.8
fallopian tube:
28.1
testis:
14.7
LZTFL1
ENSSSCG00000011314
ENSG00000163818
Leucine zipper transcription factor like 1
Tissue enhanced
Detected in all
testis:
108.0
MED12L
ENSSSCG00000011714
ENSG00000144893
Mediator complex subunit 12 like
Tissue enhanced
Detected in all
choroid plexus:
50.0
lens:
52.3
METRN
ENSSSCG00000008005
ENSG00000103260
Meteorin, glial cell differentiation regulator
Tissue enhanced
Detected in many
brain:
6.4
fallopian tube:
6.1
lung:
6.5
MGAT4C
ENSSSCG00000032321
ENSG00000182050
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Tissue enriched
Detected in some
epididymis:
102.3
MORN2
ENSSSCG00000008480
ENSG00000188010
MORN repeat containing 2
Tissue enhanced
Detected in all
choroid plexus:
73.2
testis:
66.9
na
ENSSSCG00000003781
ENSG00000178965
Tissue enhanced
Detected in many
ductus deferens:
16.3
fallopian tube:
21.3
pituitary gland:
16.8
upper respiratory system:
44.0
na
ENSSSCG00000003965
ENSG00000186409
Tissue enhanced
Detected in many
testis:
77.8
na
ENSSSCG00000006109
Tissue enhanced
Detected in all
testis:
33.4
na
ENSSSCG00000006772
Tissue enhanced
Detected in many
brain:
4.1
heart:
4.6
pineal gland:
4.3
na
ENSSSCG00000007001
Tissue enriched
Detected in many
testis:
92.8
na
ENSSSCG00000007882
Tissue enhanced
Detected in some
choroid plexus:
4.6
cornea:
10.9
mouth:
5.4
skin:
5.8
na
ENSSSCG00000008852
ENSG00000164114
Low tissue specificity
Detected in many
na
ENSSSCG00000009677
Tissue enhanced
Detected in many
pituitary gland:
11.8
na
ENSSSCG00000011724
Tissue enhanced
Detected in many
ovary:
7.3
na
ENSSSCG00000014993
ENSG00000187240
Tissue enhanced
Detected in many
testis:
27.7
na
ENSSSCG00000016166
ENSG00000144451
Tissue enhanced
Detected in some
brain:
18.3
fallopian tube:
16.3
pituitary gland:
13.2
retina:
13.0
testis:
15.0
na
ENSSSCG00000017344
Tissue enhanced
Detected in some
brain:
8.4
cartilage:
9.0
testis:
12.4
upper respiratory system:
4.9
na
ENSSSCG00000020988
ENSG00000178150
Tissue enhanced
Detected in many
epididymis:
13.9
na
ENSSSCG00000021975
Tissue enhanced
Detected in all
testis:
52.4
na
ENSSSCG00000022566
Tissue enhanced
Detected in many
epididymis:
18.2
testis:
32.8
na
ENSSSCG00000023192
Tissue enhanced
Detected in many
choroid plexus:
49.6
kidney:
32.6
retina:
18.8
na
ENSSSCG00000026164
ENSG00000120669,ENSG00000250709
Tissue enhanced
Detected in many
pituitary gland:
14.2
testis:
17.7
na
ENSSSCG00000029902
ENSG00000173715
Tissue enhanced
Detected in many
epididymis:
21.8
kidney:
23.1
na
ENSSSCG00000032399
ENSG00000213145
Tissue enhanced
Detected in many
esophagus:
9.3
retina:
15.5
na
ENSSSCG00000032606
Tissue enhanced
Detected in many
epididymis:
15.1
na
ENSSSCG00000032647
Tissue enhanced
Detected in many
choroid plexus:
9.2
na
ENSSSCG00000032933
Tissue enhanced
Detected in some
brain:
3.4
retina:
3.7
na
ENSSSCG00000033131
ENSG00000166211
Tissue enhanced
Detected in some
brain:
2.3
cornea:
6.6
lung:
2.4
ovary:
3.4
na
ENSSSCG00000033937
Low tissue specificity
Detected in all
na
ENSSSCG00000034093
Tissue enhanced
Detected in many
choroid plexus:
6.6
na
ENSSSCG00000034340
Tissue enriched
Detected in some
choroid plexus:
246.7
na
ENSSSCG00000034622
Tissue enhanced
Detected in many
testis:
10.1
na
ENSSSCG00000034721
Tissue enriched
Detected in some
epididymis:
200.6
na
ENSSSCG00000034743
Tissue enriched
Detected in some
testis:
76.2
na
ENSSSCG00000035084
Tissue enhanced
Detected in many
brain:
24.0
choroid plexus:
31.2
fallopian tube:
29.9
na
ENSSSCG00000035139
Tissue enhanced
Detected in some
epididymis:
5.0
ovary:
3.7
na
ENSSSCG00000035449
Tissue enhanced
Detected in some
brain:
2.2
cornea:
4.8
retina:
1.8
skin:
4.4
na
ENSSSCG00000036065
Tissue enhanced
Detected in some
brain:
10.1
kidney:
7.6
thyroid gland:
13.1
upper respiratory system:
9.6
na
ENSSSCG00000036153
Tissue enhanced
Detected in some
brain:
4.2
choroid plexus:
9.5
retina:
3.3
skeletal muscle:
3.5
na
ENSSSCG00000036174
Tissue enhanced
Detected in many
epididymis:
16.4
na
ENSSSCG00000036748
Tissue enhanced
Detected in many
cartilage:
9.2
testis:
22.1
na
ENSSSCG00000036849
ENSG00000100138
Tissue enhanced
Detected in some
brain:
1.3
pineal gland:
3.0
na
ENSSSCG00000037038
ENSG00000255181
Tissue enhanced
Detected in many
testis:
12.1
na
ENSSSCG00000037194
ENSG00000165775
Tissue enhanced
Detected in many
epididymis:
29.2
na
ENSSSCG00000037243
Tissue enhanced
Detected in some
brain:
2.3
choroid plexus:
2.8
epididymis:
2.7
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