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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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101 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AADACL4
ENSSSCG00000003440
ENSG00000204518
Arylacetamide deacetylase like 4
Tissue enhanced
Detected in some
choroid plexus:
2.1
mouth:
1.9
testis:
3.6
ACRBP
ENSSSCG00000000700
ENSG00000111644
Acrosin binding protein
Tissue enriched
Detected in all
testis:
107.8
AKAP3
ENSSSCG00000000720
ENSG00000111254
A-kinase anchor protein 3
Tissue enriched
Detected in many
testis:
78.4
BPIFA2
ENSSSCG00000007259
ENSG00000131050
BPI fold-containing family A member 2 precursor
Tissue enriched
Detected in some
upper respiratory system:
46.9
C6orf229
ENSSSCG00000001096
ENSG00000260286
Chromosome 6 open reading frame 229
Tissue enriched
Detected in some
testis:
32.3
C7orf31
ENSSSCG00000033313
ENSG00000153790
Chromosome 7 open reading frame 31
Tissue enriched
Detected in some
testis:
65.3
CATSPERB
ENSSSCG00000002442
ENSG00000133962
Cation channel sperm associated auxiliary subunit beta
Tissue enriched
Detected in some
testis:
33.3
CCDC62
ENSSSCG00000009787
ENSG00000130783
Coiled-coil domain containing 62
Tissue enriched
Detected in all
testis:
68.3
CCDC63
ENSSSCG00000009829
ENSG00000173093
Coiled-coil domain containing 63
Tissue enriched
Detected in some
testis:
44.6
CHIT1
ENSSSCG00000015477
ENSG00000133063
Chitinase 1
Tissue enhanced
Detected in some
dura mater:
2.8
testis:
7.1
CLEC12B
ENSSSCG00000000651
ENSG00000256660
C-type lectin domain family 12 member B
Tissue enriched
Detected in some
testis:
23.3
DYRK4
ENSSSCG00000000721
ENSG00000010219
Dual specificity tyrosine phosphorylation regulated kinase 4
Tissue enriched
Detected in some
testis:
44.2
FAM170A
ENSSSCG00000014228
ENSG00000164334
Family with sequence similarity 170 member A
Group enriched
Detected in some
testis:
13.5
thyroid gland:
23.2
FAM209B
ENSSSCG00000007498
ENSG00000124103,ENSG00000213714
Protein FAM209B precursor
Tissue enriched
Detected in some
testis:
83.5
GDF3
ENSSSCG00000000669
ENSG00000184344
Growth differentiation factor 3
Group enriched
Detected in some
testis:
4.7
thyroid gland:
5.6
IFN-OMEGA-5
ENSSSCG00000038075
Interferon omega 7 precursor
Tissue enhanced
Detected in some
lymphoid tissue:
2.1
mouth:
1.1
skin:
1.4
testis:
1.6
upper respiratory system:
1.0
IL4I1
ENSSSCG00000003192
ENSG00000104951
Interleukin 4 induced 1
Tissue enriched
Detected in many
testis:
91.7
KAT7
ENSSSCG00000017553
ENSG00000136504
Histone acetyltransferase KAT7
Tissue enhanced
Detected in all
testis:
83.4
LRRC72
ENSSSCG00000015361
ENSG00000205858
Leucine rich repeat containing 72
Tissue enriched
Detected in many
testis:
43.7
M1AP
ENSSSCG00000008263
ENSG00000159374
Meiosis 1 associated protein
Tissue enhanced
Detected in some
cartilage:
7.5
testis:
19.7
MRGBP
ENSSSCG00000035353
ENSG00000101189
MRG domain binding protein
Tissue enriched
Detected in all
testis:
69.8
MS4A5
ENSSSCG00000026796
ENSG00000166930
Membrane spanning 4-domains A5
Tissue enriched
Detected in some
testis:
67.4
na
ENSSSCG00000000296
ENSG00000124196
Group enriched
Detected in some
ovary:
4.9
testis:
15.7
thyroid gland:
4.5
na
ENSSSCG00000001083
ENSG00000112273
Tissue enriched
Detected in many
testis:
67.0
na
ENSSSCG00000001232
Tissue enriched
Detected in some
testis:
52.9
na
ENSSSCG00000001254
Tissue enhanced
Detected in some
testis:
4.9
na
ENSSSCG00000001444
ENSG00000204296
Tissue enriched
Detected in single
testis:
58.6
na
ENSSSCG00000002850
ENSG00000177600
Tissue enhanced
Detected in some
adipose tissue:
2.7
testis:
3.7
na
ENSSSCG00000002857
ENSG00000173809
Tissue enhanced
Detected in many
testis:
30.3
na
ENSSSCG00000003666
Tissue enhanced
Detected in many
testis:
10.4
na
ENSSSCG00000004355
Tissue enhanced
Detected in all
testis:
17.6
na
ENSSSCG00000007186
ENSG00000125900
Group enriched
Detected in some
lymphoid tissue:
10.1
testis:
28.5
na
ENSSSCG00000009530
ENSG00000175820
Tissue enriched
Detected in some
testis:
31.7
na
ENSSSCG00000009892
Tissue enhanced
Detected in some
kidney:
12.5
salivary gland:
7.8
testis:
30.5
na
ENSSSCG00000009895
Tissue enhanced
Detected in some
kidney:
7.4
salivary gland:
6.1
testis:
22.7
na
ENSSSCG00000009950
ENSG00000184571
Group enriched
Detected in some
large intestine:
6.9
testis:
15.9
na
ENSSSCG00000012120
Tissue enhanced
Detected in some
dura mater:
5.5
lymphoid tissue:
6.8
stomach:
4.0
testis:
5.8
na
ENSSSCG00000012812
Tissue enriched
Detected in many
testis:
23.7
na
ENSSSCG00000016789
Group enriched
Detected in some
testis:
10.7
thyroid gland:
15.8
na
ENSSSCG00000017285
Tissue enriched
Detected in some
testis:
57.7
na
ENSSSCG00000017942
Tissue enriched
Detected in some
testis:
67.4
na
ENSSSCG00000022114
ENSG00000166928
Tissue enriched
Detected in single
testis:
109.7
na
ENSSSCG00000025687
Leukocyte immunoglobulin-like receptor-like
Group enriched
Detected in some
bone marrow:
3.5
lymphoid tissue:
4.2
ovary:
4.5
testis:
8.2
na
ENSSSCG00000027240
ENSG00000181903
Group enriched
Detected in some
kidney:
3.2
testis:
2.5
na
ENSSSCG00000027589
Group enriched
Detected in some
kidney:
3.9
testis:
9.0
na
ENSSSCG00000028159
ENSG00000119599,ENSG00000176566,ENSG00000182308
Tissue enriched
Detected in all
testis:
59.5
na
ENSSSCG00000028632
Group enriched
Detected in some
testis:
31.4
thyroid gland:
8.5
na
ENSSSCG00000031148
Tissue enriched
Detected in some
testis:
11.1
na
ENSSSCG00000031162
Tissue enhanced
Detected in some
large intestine:
1.2
lung:
1.0
lymphoid tissue:
1.4
testis:
4.7
na
ENSSSCG00000031205
ENSG00000104499
Tissue enhanced
Detected in many
lymphoid tissue:
15.5
testis:
17.3
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