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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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203 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD16B
ENSSSCG00000035915
ENSG00000183260
Abhydrolase domain containing 16B
Tissue enriched
Detected in some
testis:
59.6
ACR
ENSSSCG00000021265
ENSG00000100312
Acrosin precursor
Tissue enriched
Detected in some
testis:
102.7
ACTL9
ENSSSCG00000013605
ENSG00000181786
Actin like 9
Tissue enriched
Detected in single
testis:
101.8
ACTRT2
ENSSSCG00000003357
ENSG00000169717
Actin related protein T2
Tissue enriched
Detected in single
testis:
77.5
ADAM2
ENSSSCG00000034623
Disintegrin and metalloproteinase domain-containing protein 2 precursor
Tissue enriched
Detected in some
testis:
114.1
ADAM20
ENSSSCG00000034126
ENSG00000134007
ADAM metallopeptidase domain 20
Tissue enriched
Detected in some
testis:
19.1
ADAM21
ENSSSCG00000002322
ENSG00000139985
ADAM metallopeptidase domain 21
Tissue enriched
Detected in some
testis:
36.5
AKAP4
ENSSSCG00000012306
ENSG00000147081
A-kinase anchoring protein 4
Tissue enriched
Detected in some
testis:
123.8
ANKRD35
ENSSSCG00000006688
ENSG00000198483
Ankyrin repeat domain 35
Tissue enriched
Detected in many
testis:
167.6
ANKRD60
ENSSSCG00000007511
ENSG00000124227
Ankyrin repeat domain-containing protein 60
Group enriched
Detected in some
lens:
17.8
testis:
24.0
ARID3C
ENSSSCG00000010971
ENSG00000205143
AT-rich interaction domain 3C
Tissue enhanced
Detected in many
testis:
33.8
ATP8B3
ENSSSCG00000013440
ENSG00000130270
ATPase phospholipid transporting 8B3
Tissue enriched
Detected in some
testis:
97.7
BAAT
ENSSSCG00000035245
ENSG00000136881
Bile acid-CoA:amino acid N-acyltransferase
Tissue enhanced
Detected in some
fallopian tube:
3.1
testis:
7.5
BHMG1
ENSSSCG00000039916
ENSG00000237452
Basic helix-loop-helix and HMG-box containing 1
Tissue enriched
Detected in some
testis:
12.6
BOLL
ENSSSCG00000016082
ENSG00000152430
Boule homolog, RNA binding protein
Tissue enriched
Detected in some
testis:
85.4
BPIFA3
ENSSSCG00000024787
ENSG00000131059
BPI fold-containing family A member 3 precursor
Tissue enriched
Detected in some
testis:
80.8
BRAF
ENSSSCG00000016494
ENSG00000157764
B-Raf proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
C11orf42
ENSSSCG00000014634
ENSG00000180878
Chromosome 11 open reading frame 42
Tissue enriched
Detected in many
testis:
79.1
C11orf91
ENSSSCG00000013310
ENSG00000205177
Chromosome 11 open reading frame 91
Tissue enriched
Detected in many
testis:
41.6
C16orf86
ENSSSCG00000021711
ENSG00000159761
Chromosome 16 open reading frame 86
Tissue enriched
Detected in many
testis:
21.9
C16orf90
ENSSSCG00000007957
ENSG00000215131
Chromosome 16 open reading frame 90
Tissue enriched
Detected in some
testis:
38.9
C17orf98
ENSSSCG00000037753
ENSG00000275489
Chromosome 17 open reading frame 98
Tissue enriched
Detected in many
testis:
41.1
C18orf63
ENSSSCG00000004874
ENSG00000206043
Chromosome 18 open reading frame 63
Group enriched
Detected in some
ovary:
16.9
testis:
22.4
C19orf71
ENSSSCG00000013482
ENSG00000183397
Chromosome 19 open reading frame 71
Tissue enriched
Detected in some
testis:
100.7
C1orf158
ENSSSCG00000003442
ENSG00000157330
Chromosome 1 open reading frame 158
Tissue enriched
Detected in some
testis:
83.9
C2orf16
ENSSSCG00000008544
ENSG00000221843
Chromosome 2 open reading frame 16
Tissue enriched
Detected in some
testis:
34.4
C3orf22
ENSSSCG00000011626
ENSG00000180697
Chromosome 3 open reading frame 22
Tissue enriched
Detected in some
testis:
159.5
C3orf62
ENSSSCG00000036636
ENSG00000188315
Chromosome 3 open reading frame 62
Tissue enriched
Detected in some
testis:
22.7
C8orf74
ENSSSCG00000009691
ENSG00000171060
Chromosome 8 open reading frame 74
Tissue enriched
Detected in some
testis:
30.1
C9orf131
ENSSSCG00000005298
ENSG00000174038
Chromosome 9 open reading frame 131
Tissue enriched
Detected in some
testis:
87.9
CCDC178
ENSSSCG00000038703
ENSG00000166960
Coiled-coil domain containing 178
Tissue enriched
Detected in some
testis:
33.9
CCDC185
ENSSSCG00000010888
ENSG00000178395
Coiled-coil domain containing 185
Tissue enriched
Detected in some
testis:
64.8
CCDC197
ENSSSCG00000039415
ENSG00000175699
Coiled-coil domain containing 197
Tissue enriched
Detected in some
testis:
68.4
CCDC73
ENSSSCG00000026433
ENSG00000186714
Coiled-coil domain containing 73
Tissue enhanced
Detected in many
testis:
13.1
CETN1
ENSSSCG00000028613
ENSG00000177143
Centrin 1
Tissue enriched
Detected in single
testis:
165.2
CNTD1
ENSSSCG00000040866
ENSG00000176563
Cyclin N-terminal domain containing 1
Tissue enriched
Detected in some
testis:
40.0
COIL
ENSSSCG00000017613
ENSG00000121058
Coilin
Tissue enriched
Detected in all
testis:
64.7
CPA2
ENSSSCG00000016559
ENSG00000158516
Carboxypeptidase A2
Tissue enriched
Detected in some
testis:
24.2
CPA5
ENSSSCG00000016555
ENSG00000158525
Carboxypeptidase A5
Tissue enriched
Detected in some
testis:
53.8
CRISP2
ENSSSCG00000001736
ENSG00000124490
Cysteine-rich secretory protein 2 precursor
Tissue enriched
Detected in single
testis:
267.5
CST8
ENSSSCG00000007124
ENSG00000125815
Cystatin 8
Tissue enriched
Detected in some
testis:
60.7
DDX20
ENSSSCG00000006783
ENSG00000064703
DEAD-box helicase 20
Group enriched
Detected in all
lens:
24.8
testis:
76.3
DEFB123
ENSSSCG00000007226
ENSG00000180424
Defensin beta 123
Tissue enriched
Detected in some
testis:
76.0
DHRS4
ENSSSCG00000002013
ENSG00000157326,ENSG00000187630
Dehydrogenase/reductase SDR family member 4
Tissue enriched
Detected in many
testis:
279.6
DNAJB8
ENSSSCG00000011617
ENSG00000179407
DnaJ heat shock protein family (Hsp40) member B8
Tissue enriched
Detected in single
testis:
135.5
EFCAB3
ENSSSCG00000017304
ENSG00000172421
EF-hand calcium binding domain 3
Tissue enriched
Detected in some
testis:
39.3
FAM227B
ENSSSCG00000004648
ENSG00000166262
Family with sequence similarity 227 member B
Tissue enriched
Detected in many
testis:
38.7
FAM71D
ENSSSCG00000002286
ENSG00000172717
Family with sequence similarity 71 member D
Tissue enriched
Detected in some
testis:
102.6
FAM71E1
ENSSSCG00000003219
ENSG00000142530
Family with sequence similarity 71 member E1
Tissue enriched
Detected in many
testis:
106.7
FER1L5
ENSSSCG00000025022
ENSG00000249715
Fer-1 like family member 5
Tissue enriched
Detected in some
testis:
23.4
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