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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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203 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GAPDHS
ENSSSCG00000002888
ENSG00000105679
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tissue enriched
Detected in many
testis:
119.2
GGN
ENSSSCG00000002957
ENSG00000179168
Gametogenetin
Tissue enriched
Detected in many
testis:
106.0
GPHB5
ENSSSCG00000005116
ENSG00000179600
Glycoprotein hormone beta 5
Group enriched
Detected in some
cornea:
11.3
testis:
16.5
GSTT4
ENSSSCG00000010065
ENSG00000276950
Glutathione S-transferase theta 4
Group enriched
Detected in some
liver:
17.7
testis:
28.2
H1FNT
ENSSSCG00000000820
ENSG00000187166
H1 histone family member N, testis specific
Tissue enriched
Detected in single
testis:
83.2
HIST1H2BA
ENSSSCG00000036045
ENSG00000146047
Histone cluster 1 H2B family member a
Tissue enriched
Detected in some
testis:
359.7
HRH4
ENSSSCG00000003714
ENSG00000134489
Histamine H4 receptor
Low tissue specificity
Detected in many
HSF5
ENSSSCG00000017641
ENSG00000176160
Heat shock transcription factor 5
Tissue enriched
Detected in some
testis:
101.9
HSPA1L
ENSSSCG00000030368
ENSG00000204390
Heat shock 70 kDa protein 1-like
Tissue enriched
Detected in many
testis:
71.8
IL13
ENSSSCG00000014281
ENSG00000169194
Interleukin-13
Tissue enhanced
Detected in many
testis:
6.9
INSL3
ENSSSCG00000013887
ENSG00000248099
Insulin-like 3 Insulin-like 3 B chain Insulin-like 3 A chain
Tissue enriched
Detected in some
testis:
468.6
IRGC
ENSSSCG00000003066
ENSG00000124449
Interferon-inducible GTPase 5
Tissue enriched
Detected in some
testis:
130.9
IZUMO4
ENSSSCG00000013455
ENSG00000099840
IZUMO family member 4
Tissue enriched
Detected in many
testis:
165.6
KCNU1
ENSSSCG00000029131
ENSG00000215262
Potassium calcium-activated channel subfamily U member 1
Tissue enhanced
Detected in some
heart:
4.5
male glands:
9.2
testis:
24.9
KIF25
ENSSSCG00000004016
ENSG00000125337
Kinesin family member 25
Tissue enriched
Detected in many
testis:
40.1
MARCH10
ENSSSCG00000017299
ENSG00000173838
Membrane associated ring-CH-type finger 10
Tissue enriched
Detected in many
testis:
52.9
na
ENSSSCG00000000461
Tissue enhanced
Detected in some
brain:
2.5
liver:
4.0
testis:
5.1
na
ENSSSCG00000001001
ENSG00000185689
Tissue enriched
Detected in some
testis:
39.7
na
ENSSSCG00000001105
Tissue enriched
Detected in some
testis:
63.2
na
ENSSSCG00000001633
ENSG00000214732
Tissue enriched
Detected in some
testis:
140.1
na
ENSSSCG00000001926
ENSG00000187806
Tissue enriched
Detected in some
testis:
58.6
na
ENSSSCG00000002284
ENSG00000196553
Tissue enriched
Detected in some
testis:
58.9
na
ENSSSCG00000002321
Tissue enriched
Detected in some
testis:
19.3
na
ENSSSCG00000003476
ENSG00000187144
Tissue enriched
Detected in some
testis:
41.5
na
ENSSSCG00000003774
ENSG00000057468
Tissue enriched
Detected in some
testis:
20.5
na
ENSSSCG00000003845
ENSG00000184313
Tissue enriched
Detected in some
testis:
60.8
na
ENSSSCG00000004770
Tissue enriched
Detected in some
testis:
14.1
na
ENSSSCG00000006679
Tissue enriched
Detected in some
testis:
91.5
na
ENSSSCG00000006711
Tissue enriched
Detected in many
testis:
31.3
na
ENSSSCG00000007123
Tissue enriched
Detected in some
testis:
104.0
na
ENSSSCG00000007219
Tissue enriched
Detected in some
epididymis:
123.8
na
ENSSSCG00000007221
Group enriched
Detected in some
epididymis:
34.6
lens:
22.6
testis:
69.8
na
ENSSSCG00000007847
Tissue enriched
Detected in some
testis:
41.4
na
ENSSSCG00000008849
ENSG00000267360
Tissue enhanced
Detected in some
fallopian tube:
7.3
heart:
4.5
testis:
14.1
na
ENSSSCG00000009001
Tissue enriched
Detected in some
testis:
36.2
na
ENSSSCG00000009411
ENSG00000173988
Tissue enriched
Detected in some
testis:
33.0
na
ENSSSCG00000010103
Tissue enriched
Detected in single
testis:
128.8
na
ENSSSCG00000010498
ENSG00000188649
Tissue enriched
Detected in many
testis:
45.5
na
ENSSSCG00000012218
Tissue enhanced
Detected in some
lens:
2.5
pineal gland:
3.0
testis:
10.2
na
ENSSSCG00000012360
Tissue enriched
Detected in some
testis:
15.5
na
ENSSSCG00000012469
Tissue enriched
Detected in some
testis:
53.0
na
ENSSSCG00000012565
Tissue enriched
Detected in some
testis:
41.6
na
ENSSSCG00000012714
ENSG00000203933
Tissue enriched
Detected in many
testis:
38.3
na
ENSSSCG00000013412
Tissue enriched
Detected in some
testis:
25.3
na
ENSSSCG00000013559
Tissue enhanced
Detected in some
testis:
5.8
na
ENSSSCG00000014690
ENSG00000175518
Tissue enriched
Detected in single
testis:
127.9
na
ENSSSCG00000016278
ENSG00000177673
Tissue enriched
Detected in single
testis:
121.3
na
ENSSSCG00000016329
Tissue enriched
Detected in some
testis:
54.7
na
ENSSSCG00000017324
Tissue enhanced
Detected in many
cartilage:
13.6
epididymis:
9.6
testis:
33.6
na
ENSSSCG00000017577
Group enriched
Detected in all
cartilage:
12.8
salivary gland:
15.9
testis:
21.7
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