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UMAP gene cluster
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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704 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FOXI3
ENSSSCG00000036354
ENSG00000214336
Forkhead box I3
Group enriched
Detected in some
retina:
6.7
testis:
13.1
FOXR1
ENSSSCG00000015101
ENSG00000176302
Forkhead box R1
Tissue enriched
Detected in some
testis:
14.2
FSCN3
ENSSSCG00000016592
ENSG00000106328
Fascin-3
Tissue enriched
Detected in single
testis:
69.4
FSHR
ENSSSCG00000029084
ENSG00000170820
Follicle-stimulating hormone receptor precursor
Tissue enriched
Detected in some
testis:
18.0
FSIP2
ENSSSCG00000016024
ENSG00000188738
Fibrous sheath interacting protein 2
Tissue enriched
Detected in single
testis:
91.5
FTMT
ENSSSCG00000014231
ENSG00000181867
Ferritin mitochondrial
Tissue enriched
Detected in some
testis:
61.8
GK2
ENSSSCG00000009257
ENSG00000196475
Glycerol kinase 2
Tissue enriched
Detected in some
testis:
107.4
GLIPR1L2
ENSSSCG00000025915
ENSG00000180481
GLIPR1 like 2
Tissue enriched
Detected in some
testis:
14.0
GOT1L1
ENSSSCG00000038325
ENSG00000169154
Glutamic-oxaloacetic transaminase 1 like 1
Tissue enriched
Detected in single
testis:
29.0
GPC2
ENSSSCG00000007649
ENSG00000213420
Glypican 2
Tissue enhanced
Detected in many
retina:
12.4
testis:
32.2
GPR135
ENSSSCG00000032928
ENSG00000181619
G protein-coupled receptor 135
Tissue enriched
Detected in many
testis:
37.1
GPR161
ENSSSCG00000006302
ENSG00000143147
G protein-coupled receptor 161
Tissue enriched
Detected in many
testis:
57.7
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GSG1
ENSSSCG00000039316
ENSG00000111305
Germ cell associated 1
Tissue enriched
Detected in some
testis:
187.0
GSTM3
ENSSSCG00000006821
ENSG00000134202
Glutathione S-transferase Mu 3
Tissue enriched
Detected in some
testis:
140.1
GTSF1
ENSSSCG00000026333
ENSG00000170627
Gametocyte specific factor 1
Tissue enriched
Detected in some
testis:
66.3
HIPK4
ENSSSCG00000021917
ENSG00000160396
Homeodomain interacting protein kinase 4
Tissue enriched
Detected in many
testis:
55.0
HIST1H1T
ENSSSCG00000033398
ENSG00000187475
Histone cluster 1 H1 family member t
Tissue enriched
Detected in some
testis:
281.9
HMGB4
ENSSSCG00000021247
ENSG00000176256
High mobility group box 4
Tissue enriched
Detected in single
testis:
206.4
HORMAD1
ENSSSCG00000006649
ENSG00000143452
HORMA domain-containing protein 1
Tissue enriched
Detected in some
testis:
42.9
HORMAD2
ENSSSCG00000009995
ENSG00000176635
HORMA domain containing 2
Tissue enriched
Detected in some
testis:
51.1
HRASLS5
ENSSSCG00000021482
ENSG00000168004
HRAS like suppressor family member 5
Tissue enriched
Detected in many
testis:
64.4
HSD17B3
ENSSSCG00000010937
ENSG00000130948
Testosterone 17-beta-dehydrogenase 3
Tissue enriched
Detected in some
testis:
32.9
HSPB9
ENSSSCG00000017413
ENSG00000260325
Heat shock protein family B (small) member 9
Tissue enriched
Detected in single
testis:
169.4
HTR1D
ENSSSCG00000025500
ENSG00000179546
5-hydroxytryptamine receptor 1D
Tissue enhanced
Detected in many
ovary:
25.9
testis:
20.4
HTR3B
ENSSSCG00000015053
ENSG00000149305
5-hydroxytryptamine receptor 3B
Tissue enriched
Detected in some
testis:
52.3
INSL6
ENSSSCG00000005214
ENSG00000120210
Insulin like 6
Tissue enriched
Detected in some
testis:
58.1
IQCF2
ENSSSCG00000023824
ENSG00000184345
IQ motif containing F2
Tissue enriched
Detected in some
testis:
57.9
IZUMO3
ENSSSCG00000005129
ENSG00000205442
IZUMO family member 3
Tissue enriched
Detected in single
testis:
37.5
KCTD19
ENSSSCG00000002781
ENSG00000168676
Potassium channel tetramerization domain containing 19
Tissue enriched
Detected in single
testis:
72.2
KIF2B
ENSSSCG00000017599
ENSG00000141200
Kinesin family member 2B
Tissue enriched
Detected in single
testis:
58.7
KLHL10
ENSSSCG00000033629
ENSG00000161594
Kelch like family member 10
Tissue enriched
Detected in single
testis:
75.7
KLLN
ENSSSCG00000034320
ENSG00000227268
Killin, p53 regulated DNA replication inhibitor
Tissue enhanced
Detected in many
large intestine:
4.8
testis:
12.2
LDHC
ENSSSCG00000013363
ENSG00000166796
L-lactate dehydrogenase C chain
Tissue enriched
Detected in some
testis:
76.1
LRRC74A
ENSSSCG00000002391
ENSG00000100565
Leucine rich repeat containing 74A
Tissue enriched
Detected in single
testis:
18.5
LRRIQ4
ENSSSCG00000023679
ENSG00000188306
Leucine rich repeats and IQ motif containing 4
Tissue enriched
Detected in some
testis:
19.2
LYPD4
ENSSSCG00000003044
ENSG00000273111
Ly6/PLAUR domain-containing protein 4 precursor
Tissue enriched
Detected in some
testis:
84.3
LYZL4
ENSSSCG00000011279
ENSG00000157093
Lysozyme like 4
Tissue enriched
Detected in single
testis:
46.3
LYZL6
ENSSSCG00000017321
ENSG00000275722
Lysozyme like 6
Tissue enriched
Detected in single
testis:
48.5
MAEL
ENSSSCG00000006316
ENSG00000143194
Protein maelstrom homolog
Tissue enriched
Detected in some
testis:
56.6
MAGEB10
ENSSSCG00000012193
ENSG00000177689
MAGE family member B10
Tissue enriched
Detected in single
testis:
13.8
MAGEB3
ENSSSCG00000012198
ENSG00000198798
MAGE family member B3
Tissue enriched
Detected in some
testis:
10.7
MAJIN
ENSSSCG00000040674
ENSG00000168070
Membrane anchored junction protein
Tissue enriched
Detected in some
testis:
30.2
MCHR2
ENSSSCG00000004356
ENSG00000152034
Melanin-concentrating hormone receptor 2
Group enriched
Detected in some
brain:
3.5
skin:
4.8
testis:
6.8
MCMDC2
ENSSSCG00000006205
ENSG00000178460
Minichromosome maintenance domain containing 2
Group enriched
Detected in many
choroid plexus:
10.7
testis:
18.4
MEIOC
ENSSSCG00000017351
ENSG00000180336
Meiosis specific with coiled-coil domain
Tissue enriched
Detected in single
testis:
59.6
MGAT4D
ENSSSCG00000038236
ENSG00000205301
MGAT4 family member D
Tissue enriched
Detected in some
testis:
37.8
MOV10L1
ENSSSCG00000000976
ENSG00000073146
Mov10 RISC complex RNA helicase like 1
Tissue enriched
Detected in some
testis:
46.7
MPC1L
ENSSSCG00000012248
ENSG00000238205
Mitochondrial pyruvate carrier 1 like
Tissue enriched
Detected in single
testis:
35.4
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
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