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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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322 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC3B
ENSSSCG00000011299
ENSG00000163815
C-type lectin domain family 3 member B
Tissue enhanced
Detected in many
adipose tissue:
80.1
CNGA4
ENSSSCG00000014630
ENSG00000132259
Cyclic nucleotide gated channel alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
7.2
COL5A3
ENSSSCG00000013667
ENSG00000080573
Collagen alpha-3(V) chain precursor
Tissue enhanced
Detected in many
adipose tissue:
67.0
aorta:
38.8
bone marrow:
48.9
COL6A6
ENSSSCG00000037430
ENSG00000206384
Collagen type VI alpha 6 chain
Tissue enhanced
Detected in many
adipose tissue:
23.6
heart:
21.3
lymphoid tissue:
18.9
CRYBG3
ENSSSCG00000022895
ENSG00000080200
Crystallin beta-gamma domain containing 3
Tissue enhanced
Detected in many
heart:
77.6
CTCFL
ENSSSCG00000007505
ENSG00000124092
Transcriptional repressor CTCFL
Tissue enriched
Detected in some
adipose tissue:
27.4
CXorf36
ENSSSCG00000026984
ENSG00000147113
Chromosome X open reading frame 36
Low tissue specificity
Detected in many
CYGB
ENSSSCG00000017181
ENSG00000161544
Cytoglobin
Low tissue specificity
Detected in many
CYYR1
ENSSSCG00000037935
ENSG00000166265
Cysteine and tyrosine rich 1
Low tissue specificity
Detected in many
DACH1
ENSSSCG00000009457
ENSG00000276644
Dachshund family transcription factor 1
Low tissue specificity
Detected in many
DCST1
ENSSSCG00000035071
ENSG00000163357
DC-STAMP domain containing 1
Tissue enhanced
Detected in some
adipose tissue:
12.9
testis:
18.7
DEPP1
ENSSSCG00000022256
ENSG00000165507
DEPP1, autophagy regulator
Tissue enhanced
Detected in many
aorta:
74.1
cartilage:
67.8
mesothelial tissue:
77.9
DGAT2
ENSSSCG00000034102
ENSG00000062282
Diacylglycerol O-acyltransferase 2
Tissue enhanced
Detected in many
adipose tissue:
139.7
aorta:
74.8
bone marrow:
64.2
DLEU7
ENSSSCG00000009387
ENSG00000186047
Deleted in lymphocytic leukemia, 7
Tissue enhanced
Detected in many
adipose tissue:
6.2
synovial tissue:
5.4
DLL1
ENSSSCG00000027726
ENSG00000198719
Delta like canonical Notch ligand 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.3
DLL4
ENSSSCG00000004755
ENSG00000128917
Delta-like protein 4 precursor
Low tissue specificity
Detected in many
DOCK6
ENSSSCG00000038604
ENSG00000130158
Dedicator of cytokinesis 6
Low tissue specificity
Detected in many
DOCK9
ENSSSCG00000022112
ENSG00000088387
Dedicator of cytokinesis 9
Low tissue specificity
Detected in all
DUS2
ENSSSCG00000022098
ENSG00000167264
Dihydrouridine synthase 2
Low tissue specificity
Detected in all
DUSP6
ENSSSCG00000037910
ENSG00000139318
Dual specificity protein phosphatase 6
Low tissue specificity
Detected in many
DUSP7
ENSSSCG00000011430
ENSG00000164086
Dual specificity phosphatase 7
Low tissue specificity
Detected in all
DYSF
ENSSSCG00000008312
ENSG00000135636
Dysferlin
Tissue enhanced
Detected in all
skeletal muscle:
45.7
EBF1
ENSSSCG00000017046
ENSG00000164330
Early B cell factor 1
Tissue enhanced
Detected in many
adipose tissue:
65.3
bone marrow:
66.5
EBF2
ENSSSCG00000009655
ENSG00000221818
Early B cell factor 2
Tissue enhanced
Detected in many
adipose tissue:
22.9
vagus nerve:
35.3
EBF3
ENSSSCG00000010757
ENSG00000108001
Early B cell factor 3
Tissue enhanced
Detected in many
adipose tissue:
32.3
ECE1
ENSSSCG00000003513
ENSG00000117298
Endothelin converting enzyme 1
Low tissue specificity
Detected in all
EDN1
ENSSSCG00000035598
ENSG00000078401
Endothelin-1 preproprotein
Low tissue specificity
Detected in all
EDNRA
ENSSSCG00000009031
ENSG00000151617
Endothelin-1 receptor precursor
Tissue enhanced
Detected in many
heart:
41.0
EFCC1
ENSSSCG00000024000
ENSG00000114654
EF-hand and coiled-coil domain containing 1
Low tissue specificity
Detected in all
EGFL7
ENSSSCG00000005828
ENSG00000172889
EGF like domain multiple 7
Low tissue specificity
Detected in all
EGFLAM
ENSSSCG00000016848
ENSG00000164318
EGF like, fibronectin type III and laminin G domains
Tissue enhanced
Detected in many
mesothelial tissue:
40.6
retina:
39.6
EGR1
ENSSSCG00000014336
ENSG00000120738
Early growth response 1
Tissue enhanced
Detected in many
synovial tissue:
149.2
EGR2
ENSSSCG00000010224
ENSG00000122877
E3 SUMO-protein ligase EGR2
Tissue enhanced
Detected in many
epididymis:
35.7
synovial tissue:
43.8
vagus nerve:
64.5
ELOVL6
ENSSSCG00000036236
ENSG00000170522
ELOVL fatty acid elongase 6
Tissue enhanced
Detected in many
adipose tissue:
71.4
aorta:
68.9
EMCN
ENSSSCG00000038080
ENSG00000164035
Endomucin
Low tissue specificity
Detected in many
EN1
ENSSSCG00000015715
ENSG00000163064
Engrailed homeobox 1
Tissue enhanced
Detected in some
adipose tissue:
20.6
brain:
20.2
skeletal muscle:
19.1
skin:
11.2
ENG
ENSSSCG00000005625
ENSG00000106991
Endoglin precursor
Low tissue specificity
Detected in all
EPAS1
ENSSSCG00000008443
ENSG00000116016
Endothelial PAS domain-containing protein 1
Low tissue specificity
Detected in many
EPS8
ENSSSCG00000000600
ENSG00000151491
Epidermal growth factor receptor pathway substrate 8
Tissue enhanced
Detected in all
thyroid gland:
65.7
ERG
ENSSSCG00000022318
ENSG00000157554
Transcriptional regulator ERG
Tissue enhanced
Detected in many
cartilage:
56.5
ESAM
ENSSSCG00000015200
ENSG00000149564
Endothelial cell adhesion molecule
Low tissue specificity
Detected in many
EVA1C
ENSSSCG00000021598
ENSG00000166979
Eva-1 homolog C
Tissue enhanced
Detected in all
mesothelial tissue:
39.7
EXOC3L1
ENSSSCG00000002788
ENSG00000179044
Exocyst complex component 3 like 1
Low tissue specificity
Detected in many
F8
ENSSSCG00000012818
ENSG00000185010
Coagulation factor VIII precursor
Tissue enhanced
Detected in many
penis:
47.6
FABP4
ENSSSCG00000040681
ENSG00000170323
Fatty acid-binding protein, adipocyte
Tissue enhanced
Detected in many
adipose tissue:
239.6
aorta:
112.0
bone marrow:
191.5
FAM110D
ENSSSCG00000031074
ENSG00000197245
Protein FAM110D isoform 1
Tissue enhanced
Detected in many
mesothelial tissue:
39.4
FAM124B
ENSSSCG00000021852
ENSG00000124019
Family with sequence similarity 124 member B
Low tissue specificity
Detected in many
FAM167B
ENSSSCG00000003616
ENSG00000183615
Family with sequence similarity 167 member B
Low tissue specificity
Detected in many
FAM43A
ENSSSCG00000011828
ENSG00000185112
Family with sequence similarity 43 member A
Low tissue specificity
Detected in all
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