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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RUNX3
ENSSSCG00000032686
ENSG00000020633
Runt related transcription factor 3
Tissue enhanced
Detected in many
lymphoid tissue:
35.4
stomach:
35.2
S1PR4
ENSSSCG00000013474
ENSG00000125910
Sphingosine-1-phosphate receptor 4
Tissue enhanced
Detected in some
lymphoid tissue:
17.9
upper respiratory system:
6.5
SASH3
ENSSSCG00000012652
ENSG00000122122
SAM and SH3 domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
58.0
SCML4
ENSSSCG00000033392
ENSG00000146285
Scm polycomb group protein like 4
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
small intestine:
25.1
stomach:
20.2
SEMA4A
ENSSSCG00000006495
ENSG00000196189
Semaphorin 4A
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
34.4
SEPT1
ENSSSCG00000007800
ENSG00000180096
Septin-1
Tissue enhanced
Detected in all
lymphoid tissue:
76.7
SEPT6
ENSSSCG00000012619
ENSG00000125354
Septin 6
Tissue enhanced
Detected in all
lymphoid tissue:
112.6
SIT1
ENSSSCG00000005312
ENSG00000137078
Signaling threshold regulating transmembrane adaptor 1
Tissue enriched
Detected in some
lymphoid tissue:
64.0
SKAP1
ENSSSCG00000017527
ENSG00000141293
Src kinase associated phosphoprotein 1
Tissue enhanced
Detected in many
large intestine:
19.5
lymphoid tissue:
41.3
SLA2
ENSSSCG00000033020
ENSG00000101082
Src like adaptor 2
Tissue enhanced
Detected in all
lymphoid tissue:
35.6
stomach:
21.1
SLAMF7
ENSSSCG00000006378
ENSG00000026751
SLAM family member 7
Tissue enhanced
Detected in all
lymphoid tissue:
45.9
SLBP
ENSSSCG00000008676
ENSG00000163950
Histone RNA hairpin-binding protein
Low tissue specificity
Detected in all
SLC45A3
ENSSSCG00000026547
ENSG00000158715
Solute carrier family 45 member 3
Tissue enhanced
Detected in many
large intestine:
22.6
lymphoid tissue:
22.7
male glands:
19.5
stomach:
46.2
SLC7A6
ENSSSCG00000034835
ENSG00000103064
Solute carrier family 7 member 6
Low tissue specificity
Detected in all
SLX4
ENSSSCG00000007954
ENSG00000188827
SLX4 structure-specific endonuclease subunit
Tissue enhanced
Detected in all
testis:
33.2
SPNS3
ENSSSCG00000017880
ENSG00000182557
Sphingolipid transporter 3 (putative)
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
stomach:
9.3
STK17B
ENSSSCG00000016067
ENSG00000081320
Serine/threonine kinase 17b
Tissue enhanced
Detected in many
lymphoid tissue:
56.8
male glands:
32.5
STK26
ENSSSCG00000021205
ENSG00000134602
Serine/threonine-protein kinase 26
Tissue enhanced
Detected in all
cartilage:
31.0
lymphoid tissue:
31.8
STK4
ENSSSCG00000030820
ENSG00000101109
Serine/threonine kinase 4
Tissue enhanced
Detected in all
lymphoid tissue:
53.1
SUDS3
ENSSSCG00000009849
ENSG00000111707
Sin3 histone deacetylase corepressor complex component SDS3
Low tissue specificity
Detected in all
SUSD1
ENSSSCG00000005465
ENSG00000106868
Sushi domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.3
TANK
ENSSSCG00000015889
ENSG00000136560
TRAF family member associated NFKB activator
Low tissue specificity
Detected in all
TAOK3
ENSSSCG00000009850
ENSG00000135090
TAO kinase 3
Low tissue specificity
Detected in all
TBC1D10C
ENSSSCG00000012912
ENSG00000175463
TBC1 domain family member 10C
Tissue enhanced
Detected in all
lymphoid tissue:
40.5
stomach:
22.2
TCF7
ENSSSCG00000030680
ENSG00000081059
Transcription factor 7
Tissue enriched
Detected in many
lymphoid tissue:
169.9
THEMIS
ENSSSCG00000024392
ENSG00000172673
Thymocyte selection associated
Tissue enriched
Detected in some
lymphoid tissue:
49.1
TMC6
ENSSSCG00000032562
ENSG00000141524
Transmembrane channel like 6
Tissue enhanced
Detected in many
lymphoid tissue:
49.7
stomach:
34.2
TMC8
ENSSSCG00000033592
ENSG00000167895
Transmembrane channel like 8
Tissue enhanced
Detected in many
lymphoid tissue:
39.0
TMEM206
ENSSSCG00000015598
ENSG00000065600
Transmembrane protein 206
Low tissue specificity
Detected in all
TNFRSF21
ENSSSCG00000001727
ENSG00000146072
TNF receptor superfamily member 21
Tissue enhanced
Detected in many
male glands:
130.1
stomach:
54.8
TNFSF14
ENSSSCG00000026695
ENSG00000125735
Tumor necrosis factor ligand superfamily member 14
Tissue enhanced
Detected in many
stomach:
22.8
TOX
ENSSSCG00000006235
ENSG00000198846
Thymocyte selection associated high mobility group box
Tissue enhanced
Detected in many
lymphoid tissue:
54.8
stomach:
40.2
TP53INP1
ENSSSCG00000034321
ENSG00000164938
Tumor protein p53 inducible nuclear protein 1
Low tissue specificity
Detected in all
TRAF1
ENSSSCG00000005511
ENSG00000056558
TNF receptor associated factor 1
Tissue enhanced
Detected in all
lymphoid tissue:
28.7
stomach:
28.5
TRAT1
ENSSSCG00000023842
ENSG00000163519
T cell receptor associated transmembrane adaptor 1
Tissue enhanced
Detected in some
large intestine:
11.0
lymphoid tissue:
26.9
small intestine:
11.8
TRAV26-2
ENSSSCG00000039980
T cell receptor alpha variable 26-2
Tissue enriched
Detected in many
lymphoid tissue:
52.8
TRAV36DV7
ENSSSCG00000027788
T cell receptor alpha variable 36/delta variable 7
Tissue enhanced
Detected in some
kidney:
9.3
lymphoid tissue:
13.1
TRBV19
ENSSSCG00000016479
T cell receptor beta variable 19
Tissue enriched
Detected in some
lymphoid tissue:
62.0
TRDC
ENSSSCG00000022512
T cell receptor delta constant
Tissue enriched
Detected in many
lymphoid tissue:
67.6
TREML2
ENSSSCG00000001616
ENSG00000112195
Triggering receptor expressed on myeloid cells like 2
Tissue enhanced
Detected in some
lymphoid tissue:
23.6
UBASH3B
ENSSSCG00000015136
ENSG00000154127
Ubiquitin associated and SH3 domain containing B
Tissue enhanced
Detected in all
lymphoid tissue:
59.2
UBXN11
ENSSSCG00000033546
ENSG00000158062
UBX domain protein 11
Tissue enhanced
Detected in many
lymphoid tissue:
38.5
VPREB1
ENSSSCG00000022467
ENSG00000169575
Immunoglobulin iota chain precursor
Tissue enhanced
Detected in some
bone marrow:
7.5
lymphoid tissue:
11.4
small intestine:
4.1
XCL1
ENSSSCG00000006298
ENSG00000143184,ENSG00000143185
Lymphotactin precursor
Tissue enhanced
Detected in some
large intestine:
11.3
lymphoid tissue:
10.9
upper respiratory system:
8.6
XCR1
ENSSSCG00000026707
ENSG00000173578
Chemokine XC receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.4
XKRX
ENSSSCG00000012487
ENSG00000182489
XK related, X-linked
Tissue enhanced
Detected in many
lymphoid tissue:
14.1
ZAP70
ENSSSCG00000008193
ENSG00000115085
Zeta chain of T cell receptor associated protein kinase 70
Tissue enhanced
Detected in many
lymphoid tissue:
44.4
stomach:
19.4
ZNF683
ENSSSCG00000040579
ENSG00000176083
Zinc finger protein 683
Tissue enriched
Detected in many
testis:
82.9
ZNF831
ENSSSCG00000007526
ENSG00000124203
Zinc finger protein 831
Tissue enhanced
Detected in some
lymphoid tissue:
19.1
stomach:
13.1
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