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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000033933
ENSG00000189013
Killer cell immunoglobulin-like receptor 2DL1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
6.0
stomach:
5.4
na
ENSSSCG00000033957
ENSG00000136810
Tissue enhanced
Detected in some
large intestine:
1.4
lymphoid tissue:
3.8
synovial tissue:
2.3
na
ENSSSCG00000034553
Low tissue specificity
Detected in many
na
ENSSSCG00000034697
Tissue enhanced
Detected in all
lymphoid tissue:
50.9
na
ENSSSCG00000034853
Tissue enhanced
Detected in many
lung:
79.5
stomach:
147.1
na
ENSSSCG00000034914
Scavenger receptor cysteine-rich type 1 protein M160 precursor
Tissue enriched
Detected in some
lymphoid tissue:
16.8
na
ENSSSCG00000034930
Tissue enhanced
Detected in some
kidney:
12.0
lymphoid tissue:
5.1
testis:
4.1
na
ENSSSCG00000035234
Tissue enhanced
Detected in many
lymphoid tissue:
19.4
na
ENSSSCG00000035256
ENSG00000197471
Tissue enhanced
Detected in many
lymphoid tissue:
50.0
na
ENSSSCG00000035356
Tissue enhanced
Detected in many
lymphoid tissue:
18.7
na
ENSSSCG00000035870
Tissue enriched
Detected in some
lymphoid tissue:
11.1
na
ENSSSCG00000035925
ENSG00000198965
Tissue enriched
Detected in single
lymphoid tissue:
3.8
na
ENSSSCG00000036180
Tissue enriched
Detected in some
skin:
92.4
na
ENSSSCG00000036406
Tissue enhanced
Detected in many
liver:
18.7
lymphoid tissue:
25.2
na
ENSSSCG00000036513
Tissue enriched
Detected in some
lymphoid tissue:
14.9
na
ENSSSCG00000036622
Low tissue specificity
Detected in all
na
ENSSSCG00000037475
Group enriched
Detected in some
bone marrow:
10.3
lymphoid tissue:
27.3
na
ENSSSCG00000037885
Tissue enriched
Detected in many
lymphoid tissue:
156.6
na
ENSSSCG00000039362
Tissue enriched
Detected in some
lymphoid tissue:
14.8
na
ENSSSCG00000039517
Low tissue specificity
Detected in all
na
ENSSSCG00000039731
ENSG00000173221
Glutaredoxin-1
Low tissue specificity
Detected in all
na
ENSSSCG00000039974
ENSG00000166797
Low tissue specificity
Detected in many
na
ENSSSCG00000040248
ENSG00000149600,ENSG00000285382
Low tissue specificity
Detected in all
na
ENSSSCG00000040534
ENSG00000158481
Tissue enriched
Detected in some
lymphoid tissue:
43.0
na
ENSSSCG00000040828
Low tissue specificity
Detected in all
NABP1
ENSSSCG00000016062
ENSG00000173559
SOSS complex subunit B2
Low tissue specificity
Detected in all
NLRC3
ENSSSCG00000007956
ENSG00000167984
NLR family CARD domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
21.9
NMUR1
ENSSSCG00000016277
ENSG00000171596
Neuromedin-U receptor 1
Tissue enhanced
Detected in many
adrenal gland:
30.2
lymphoid tissue:
12.9
NUGGC
ENSSSCG00000009673
ENSG00000189233
Nuclear GTPase, germinal center associated
Tissue enhanced
Detected in all
liver:
39.4
lymphoid tissue:
40.6
NUP210
ENSSSCG00000011610
ENSG00000132182
Nucleoporin 210
Tissue enhanced
Detected in many
lymphoid tissue:
33.3
P2RY10
ENSSSCG00000012446
ENSG00000078589
Putative P2Y purinoceptor 10
Tissue enhanced
Detected in some
lung:
7.9
lymphoid tissue:
23.8
small intestine:
9.2
upper respiratory system:
10.9
PAG1
ENSSSCG00000040208
ENSG00000076641
Phosphoprotein membrane anchor with glycosphingolipid microdomains 1
Tissue enhanced
Detected in all
lymphoid tissue:
32.7
PARP8
ENSSSCG00000016882
ENSG00000151883
Poly(ADP-ribose) polymerase family member 8
Tissue enhanced
Detected in all
lymphoid tissue:
53.7
testis:
44.4
PDCD1
ENSSSCG00000037319
ENSG00000188389
Programmed cell death protein 1 precursor
Tissue enhanced
Detected in some
large intestine:
11.0
lymphoid tissue:
14.8
thyroid gland:
7.5
PDCD1LG2
ENSSSCG00000032561
ENSG00000197646
Programmed cell death 1 ligand 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
24.9
PIK3CD
ENSSSCG00000003395
ENSG00000171608
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Tissue enhanced
Detected in all
lymphoid tissue:
41.1
stomach:
40.1
PRF1
ENSSSCG00000010271
ENSG00000180644
Perforin 1
Tissue enhanced
Detected in many
lymphoid tissue:
21.5
PRKCD
ENSSSCG00000023503
ENSG00000163932
Protein kinase C delta
Tissue enhanced
Detected in all
stomach:
54.1
PTPN22
ENSSSCG00000006764
ENSG00000134242
Protein tyrosine phosphatase, non-receptor type 22
Tissue enhanced
Detected in many
large intestine:
13.3
lymphoid tissue:
29.9
PTPN7
ENSSSCG00000037669
ENSG00000143851
Protein tyrosine phosphatase, non-receptor type 7
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
stomach:
18.3
PVRIG
ENSSSCG00000007656
ENSG00000213413
Transmembrane protein PVRIG precursor
Tissue enhanced
Detected in all
lymphoid tissue:
28.2
stomach:
18.3
RAB37
ENSSSCG00000017233
ENSG00000172794
RAB37, member RAS oncogene family
Tissue enhanced
Detected in many
lymphoid tissue:
47.2
stomach:
16.1
RABGAP1L
ENSSSCG00000015499
ENSG00000152061
RAB GTPase activating protein 1 like
Tissue enhanced
Detected in all
heart:
154.0
RASA2
ENSSSCG00000011672
ENSG00000155903
RAS p21 protein activator 2
Low tissue specificity
Detected in all
RASSF5
ENSSSCG00000031970
ENSG00000266094
Ras association domain family member 5
Tissue enhanced
Detected in many
lymphoid tissue:
46.0
salivary gland:
33.0
RFX5
ENSSSCG00000006625
ENSG00000143390
Regulatory factor X5
Low tissue specificity
Detected in all
RGS18
ENSSSCG00000033945
ENSG00000150681
Regulator of G-protein signaling 18
Low tissue specificity
Detected in all
RHOH
ENSSSCG00000008794
ENSG00000168421
Rho-related GTP-binding protein RhoH
Tissue enriched
Detected in many
lymphoid tissue:
70.4
RPS6KA1
ENSSSCG00000003558
ENSG00000117676
Ribosomal protein S6 kinase alpha-1
Tissue enhanced
Detected in many
large intestine:
38.7
RUNX2
ENSSSCG00000001710
ENSG00000124813
Runt related transcription factor 2
Tissue enhanced
Detected in many
ovary:
40.2
stomach:
49.4
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