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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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245 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SAMD9
ENSSSCG00000027372
ENSG00000205413
Sterile alpha motif domain containing 9
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
SAMHD1
ENSSSCG00000027806
ENSG00000101347
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Tissue enhanced
Detected in all
male glands:
89.0
SARM1
ENSSSCG00000030358
ENSG00000004139
Sterile alpha and TIR motif containing 1
Low tissue specificity
Detected in all
SEPT9
ENSSSCG00000017168
ENSG00000184640
Septin 9
Low tissue specificity
Detected in all
SH2B2
ENSSSCG00000007682
ENSG00000160999
SH2B adaptor protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
33.6
SH2B3
ENSSSCG00000009833
ENSG00000111252
SH2B adaptor protein 3
Low tissue specificity
Detected in all
SH2D3C
ENSSSCG00000005620
ENSG00000095370
SH2 domain containing 3C
Low tissue specificity
Detected in many
SHKBP1
ENSSSCG00000033836
ENSG00000160410
SH3KBP1 binding protein 1
Low tissue specificity
Detected in all
SIGLEC1
ENSSSCG00000007146
ENSG00000088827
Sialoadhesin precursor
Low tissue specificity
Detected in all
SLA-5
ENSSSCG00000030767
MHC class I antigen 5 precursor
Low tissue specificity
Detected in many
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLA-DOA
ENSSSCG00000001472
ENSG00000204252
SLA class II histocompatibility antigen, DO alpha chain precursor
Low tissue specificity
Detected in all
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC15A3
ENSSSCG00000013114
ENSG00000110446
Solute carrier family 15 member 3
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
synovial tissue:
44.0
SLC43A3
ENSSSCG00000033998
ENSG00000134802
Solute carrier family 43 member 3
Low tissue specificity
Detected in all
SP110
ENSSSCG00000016261
ENSG00000135899
SP110 nuclear body protein
Tissue enhanced
Detected in many
lymphoid tissue:
50.7
STX11
ENSSSCG00000004125
ENSG00000135604
Syntaxin 11
Tissue enhanced
Detected in many
lung:
17.8
SWAP70
ENSSSCG00000013410
ENSG00000133789
Switching B cell complex subunit SWAP70
Low tissue specificity
Detected in many
TAP1
ENSSSCG00000025618
ENSG00000168394
Antigen peptide transporter 1
Tissue enhanced
Detected in many
large intestine:
38.1
stomach:
49.4
TAPBP
ENSSSCG00000001507
ENSG00000231925
TAP binding protein
Low tissue specificity
Detected in all
TAPBPL
ENSSSCG00000000704
ENSG00000139192
TAP binding protein like
Low tissue specificity
Detected in all
TBC1D2B
ENSSSCG00000027477
ENSG00000167202
TBC1 domain family member 2B
Low tissue specificity
Detected in all
TICAM2
ENSSSCG00000038141
ENSG00000243414
TIR domain-containing adapter molecule 2
Low tissue specificity
Detected in all
TIFA
ENSSSCG00000009129
ENSG00000145365
TRAF interacting protein with forkhead associated domain
Low tissue specificity
Detected in many
TLDC2
ENSSSCG00000031690
ENSG00000101342
TBC/LysM-associated domain containing 2
Tissue enhanced
Detected in many
large intestine:
19.1
small intestine:
28.5
TMEM106A
ENSSSCG00000025856
ENSG00000184988
Transmembrane protein 106A
Low tissue specificity
Detected in all
TMEM2
ENSSSCG00000024257
ENSG00000135048
Transmembrane protein 2
Low tissue specificity
Detected in all
TNFAIP3
ENSSSCG00000004154
ENSG00000118503
Tumor necrosis factor alpha-induced protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
57.5
TNFAIP8
ENSSSCG00000040617
ENSG00000145779
Tumor necrosis factor alpha-induced protein 8
Tissue enhanced
Detected in many
lymphoid tissue:
33.1
TNFRSF1B
ENSSSCG00000022208
ENSG00000028137
Tumor necrosis factor receptor superfamily member 1B precursor
Tissue enhanced
Detected in many
synovial tissue:
60.5
TP53I11
ENSSSCG00000031819
ENSG00000175274
Tumor protein p53 inducible protein 11
Low tissue specificity
Detected in many
TRAPPC3L
ENSSSCG00000040660
ENSG00000173626
Trafficking protein particle complex 3 like
Tissue enhanced
Detected in many
skin:
9.1
TRIM21
ENSSSCG00000014780
ENSG00000132109
E3 ubiquitin-protein ligase TRIM21
Low tissue specificity
Detected in all
TRIM5
ENSSSCG00000014670
ENSG00000132256
Tripartite motif protein TRIM5
Low tissue specificity
Detected in many
UBA7
ENSSSCG00000011393
ENSG00000182179
Ubiquitin like modifier activating enzyme 7
Low tissue specificity
Detected in many
UBE2L6
ENSSSCG00000023379
ENSG00000156587
Ubiquitin/ISG15-conjugating enzyme E2 L6
Low tissue specificity
Detected in all
UNC93B1
ENSSSCG00000012893
ENSG00000110057
Unc-93 homolog B1, TLR signaling regulator
Low tissue specificity
Detected in all
USP18
ENSSSCG00000000774
ENSG00000161133,ENSG00000184979
Ubl carboxyl-terminal hydrolase 18
Low tissue specificity
Detected in many
WDR91
ENSSSCG00000016532
ENSG00000105875
WD repeat domain 91
Low tissue specificity
Detected in all
WIPF1
ENSSSCG00000027348
ENSG00000115935
WAS/WASL interacting protein family member 1
Low tissue specificity
Detected in all
ZBP1
ENSSSCG00000007508
ENSG00000124256
Z-DNA-binding protein 1
Tissue enhanced
Detected in many
small intestine:
29.8
stomach:
33.2
ZC3HAV1
ENSSSCG00000016512
ENSG00000105939
Zinc finger CCCH-type antiviral protein 1
Low tissue specificity
Detected in all
ZNF710
ENSSSCG00000021361
ENSG00000140548
Zinc finger protein 710
Low tissue specificity
Detected in all
ZNFX1
ENSSSCG00000030108
ENSG00000124201
Zinc finger NFX1-type containing 1
Low tissue specificity
Detected in all
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