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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
THSD4
ENSSSCG00000004980
ENSG00000187720
Thrombospondin type 1 domain containing 4
Tissue enhanced
Detected in all
dura mater:
57.7
TINAGL1
ENSSSCG00000003600
ENSG00000142910
Tubulointerstitial nephritis antigen like 1
Low tissue specificity
Detected in many
TM4SF1
ENSSSCG00000033018
ENSG00000169908
Transmembrane 4 L six family member 1
Low tissue specificity
Detected in many
TMEM109
ENSSSCG00000013110
ENSG00000110108
Transmembrane protein 109
Low tissue specificity
Detected in all
TMEM51
ENSSSCG00000021026
ENSG00000171729
Transmembrane protein 51
Low tissue specificity
Detected in all
TNFRSF11A
ENSSSCG00000004898
ENSG00000141655
TNF receptor superfamily member 11a
Low tissue specificity
Detected in many
TNFSF12
ENSSSCG00000040188
ENSG00000239697
Tumor necrosis factor ligand superfamily member 12
Low tissue specificity
Detected in all
TNS2
ENSSSCG00000000263
ENSG00000111077
Tensin 2
Low tissue specificity
Detected in all
TOB2
ENSSSCG00000037958
ENSG00000183864
Transducer of ERBB2, 2
Low tissue specificity
Detected in all
TPM1
ENSSSCG00000004570
ENSG00000140416
Tropomyosin alpha-1 chain
Tissue enhanced
Detected in all
skeletal muscle:
406.8
smooth muscle:
225.2
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPM4
ENSSSCG00000013849
ENSG00000167460
Tropomyosin alpha-4 chain
Low tissue specificity
Detected in all
TRABD2B
ENSSSCG00000037318
ENSG00000269113
TraB domain containing 2B
Tissue enhanced
Detected in many
adipose tissue:
18.4
cartilage:
37.9
TRIM65
ENSSSCG00000017195
ENSG00000141569
Tripartite motif containing 65
Low tissue specificity
Detected in all
TRIP10
ENSSSCG00000013554
ENSG00000125733
Thyroid hormone receptor interactor 10
Tissue enhanced
Detected in all
skeletal muscle:
67.4
TSC22D2
ENSSSCG00000011708
ENSG00000196428
TSC22 domain family member 2
Low tissue specificity
Detected in all
TSPAN18
ENSSSCG00000013278
ENSG00000157570
Tetraspanin 18
Tissue enhanced
Detected in many
smooth muscle:
43.6
TUBB6
ENSSSCG00000038992
ENSG00000176014
Tubulin beta 6 class V
Low tissue specificity
Detected in all
TWIST2
ENSSSCG00000016343
ENSG00000233608
Twist family bHLH transcription factor 2
Tissue enhanced
Detected in many
skin:
55.5
TXNIP
ENSSSCG00000031262
ENSG00000265972
Thioredoxin-interacting protein
Low tissue specificity
Detected in all
UACA
ENSSSCG00000004973
ENSG00000137831
Uveal autoantigen with coiled-coil domains and ankyrin repeats
Low tissue specificity
Detected in all
VASH2
ENSSSCG00000015589
ENSG00000143494
Vasohibin 2
Tissue enhanced
Detected in many
testis:
40.0
VASN
ENSSSCG00000025561
ENSG00000168140
Vasorin
Low tissue specificity
Detected in many
VAX2
ENSSSCG00000008318
ENSG00000116035
Ventral anterior homeobox 2
Tissue enhanced
Detected in many
retina:
22.0
testis:
15.2
VCL
ENSSSCG00000010313
ENSG00000035403
Vinculin
Tissue enhanced
Detected in all
smooth muscle:
130.6
VEGFD
ENSSSCG00000012135
ENSG00000165197
Vascular endothelial growth factor D
Low tissue specificity
Detected in many
VIPR2
ENSSSCG00000016403
ENSG00000106018
Vasoactive intestinal polypeptide receptor 2 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
50.2
WISP1
ENSSSCG00000005946
ENSG00000104415
WNT1 inducible signaling pathway protein 1
Tissue enhanced
Detected in many
cartilage:
33.9
WSB1
ENSSSCG00000017752
ENSG00000109046
WD repeat and SOCS box containing 1
Low tissue specificity
Detected in all
WT1
ENSSSCG00000013316
ENSG00000184937
Wilms tumor protein homolog
Tissue enhanced
Detected in many
adipose tissue:
47.8
cervix:
40.7
endometrium:
28.8
fallopian tube:
49.7
mesothelial tissue:
35.8
WWC3
ENSSSCG00000012108
ENSG00000047644
WWC family member 3
Low tissue specificity
Detected in all
WWTR1
ENSSSCG00000011704
ENSG00000018408
WW domain containing transcription regulator 1
Low tissue specificity
Detected in all
XG
ENSSSCG00000036036
ENSG00000124343
Xg blood group
Low tissue specificity
Detected in all
XKR8
ENSSSCG00000030623
ENSG00000158156
XK related 8
Low tissue specificity
Detected in all
YAP1
ENSSSCG00000031429
ENSG00000137693
Yes associated protein 1
Low tissue specificity
Detected in all
YBX3
ENSSSCG00000000633
ENSG00000060138
Y-box binding protein 3
Tissue enhanced
Detected in all
skeletal muscle:
405.5
ZBTB21
ENSSSCG00000027786
ENSG00000173276
Zinc finger and BTB domain containing 21
Low tissue specificity
Detected in all
ZFP36
ENSSSCG00000028056
ENSG00000128016
Tristetraprolin
Tissue enhanced
Detected in many
aorta:
143.1
ZFP36L1
ENSSSCG00000028304
ENSG00000185650
ZFP36 ring finger protein like 1
Low tissue specificity
Detected in many
ZMYND15
ENSSSCG00000017921
ENSG00000141497
Zinc finger MYND-type containing 15
Group enriched
Detected in many
adipose tissue:
15.1
mesothelial tissue:
56.3
testis:
28.6
ZNF185
ENSSSCG00000012759
ENSG00000147394
Zinc finger protein 185 with LIM domain
Tissue enhanced
Detected in many
epididymis:
65.9
ZNF503
ENSSSCG00000010322
ENSG00000165655
Zinc finger protein 503
Low tissue specificity
Detected in many
ZNF518B
ENSSSCG00000029711
ENSG00000178163
Zinc finger protein 518B
Low tissue specificity
Detected in all
ZSWIM4
ENSSSCG00000013758
ENSG00000132003
Zinc finger SWIM-type containing 4
Tissue enhanced
Detected in all
ovary:
44.1
ZYX
ENSSSCG00000016461
ENSG00000159840
Zyxin
Low tissue specificity
Detected in all
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