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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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260 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SH2D3A
ENSSSCG00000022380
ENSG00000125731
SH2 domain containing 3A
Tissue enhanced
Detected in many
stomach:
21.7
SH3BP2
ENSSSCG00000022004
ENSG00000087266
SH3 domain binding protein 2
Low tissue specificity
Detected in many
SH3RF2
ENSSSCG00000014410
ENSG00000156463
SH3 domain containing ring finger 2
Tissue enhanced
Detected in many
skin:
72.0
SHISA5
ENSSSCG00000011357
ENSG00000164054
Shisa family member 5
Tissue enhanced
Detected in all
adrenal gland:
86.1
SLC12A7
ENSSSCG00000034302
ENSG00000113504
Solute carrier family 12 member 7
Tissue enhanced
Detected in many
heart:
47.8
SLC12A9
ENSSSCG00000023619
ENSG00000146828
Solute carrier family 12 member 9
Low tissue specificity
Detected in all
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC26A2
ENSSSCG00000039045
ENSG00000155850
Solute carrier family 26 member 2
Tissue enhanced
Detected in many
cartilage:
51.8
dura mater:
53.7
SLC29A1
ENSSSCG00000001700
ENSG00000112759
Solute carrier family 29 member 1 (Augustine blood group)
Low tissue specificity
Detected in all
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC8B1
ENSSSCG00000009880
ENSG00000089060
Solute carrier family 8 member B1
Tissue enhanced
Detected in all
lymphoid tissue:
45.1
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SMAD7
ENSSSCG00000004507
ENSG00000101665
Mothers against decapentaplegic homolog 7
Low tissue specificity
Detected in all
SMAGP
ENSSSCG00000036904
ENSG00000170545
Small cell adhesion glycoprotein
Low tissue specificity
Detected in all
SMPDL3A
ENSSSCG00000004233
ENSG00000172594
Sphingomyelin phosphodiesterase acid like 3A
Tissue enhanced
Detected in many
male glands:
34.9
SMURF1
ENSSSCG00000030153
ENSG00000198742
SMAD specific E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
SOCS1
ENSSSCG00000027855
ENSG00000185338
Suppressor of cytokine signaling 1
Tissue enhanced
Detected in many
cartilage:
76.2
stomach:
35.0
SOCS3
ENSSSCG00000036956
ENSG00000184557
Suppressor of cytokine signaling 3
Tissue enhanced
Detected in many
aorta:
47.5
mesothelial tissue:
62.6
ovary:
66.1
SOX13
ENSSSCG00000015277
ENSG00000143842
SRY-box 13
Low tissue specificity
Detected in many
SPIDR
ENSSSCG00000006277
ENSG00000164808
Scaffolding protein involved in DNA repair
Low tissue specificity
Detected in all
ST6GALNAC4
ENSSSCG00000005628
ENSG00000136840
Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
Tissue enhanced
Detected in all
stomach:
74.8
STARD5
ENSSSCG00000001788
ENSG00000172345
StAR related lipid transfer domain containing 5
Tissue enhanced
Detected in many
skin:
20.5
STAT3
ENSSSCG00000017403
ENSG00000168610
Signal transducer and activator of transcription 3
Low tissue specificity
Detected in all
STAT5A
ENSSSCG00000017402
ENSG00000126561
Signal transducer and activator of transcription 5A
Low tissue specificity
Detected in all
STAT5B
ENSSSCG00000017406
ENSG00000173757
Signal transducer and activator of transcription 5B
Low tissue specificity
Detected in all
STAT6
ENSSSCG00000040435
ENSG00000166888
Signal transducer and activator of transcription 6 isoform 2
Low tissue specificity
Detected in many
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STK10
ENSSSCG00000022478
ENSG00000072786
Serine/threonine kinase 10
Low tissue specificity
Detected in all
STK38
ENSSSCG00000001563
ENSG00000112079
Serine/threonine kinase 38
Low tissue specificity
Detected in all
SUSD6
ENSSSCG00000002311
ENSG00000100647
Sushi domain containing 6
Low tissue specificity
Detected in all
SYNE3
ENSSSCG00000002495
ENSG00000176438
Spectrin repeat containing nuclear envelope family member 3
Low tissue specificity
Detected in all
TBC1D1
ENSSSCG00000028983
ENSG00000065882
TBC1 domain family member 1
Low tissue specificity
Detected in all
TBC1D20
ENSSSCG00000036081
ENSG00000125875
TBC1 domain family member 20
Tissue enhanced
Detected in all
lymphoid tissue:
50.1
TCF7L2
ENSSSCG00000010638
ENSG00000148737
Transcription factor 7 like 2
Low tissue specificity
Detected in all
TCIRG1
ENSSSCG00000012890
ENSG00000110719
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3
Low tissue specificity
Detected in many
TEP1
ENSSSCG00000002142
ENSG00000129566
Telomerase associated protein 1
Low tissue specificity
Detected in many
TLE3
ENSSSCG00000004971
ENSG00000140332
Transducin like enhancer of split 3
Low tissue specificity
Detected in all
TLN1
ENSSSCG00000005317
ENSG00000137076
Talin 1
Low tissue specificity
Detected in all
TLNRD1
ENSSSCG00000037209
ENSG00000140406
Mesoderm development candidate 1
Low tissue specificity
Detected in all
TMEM131
ENSSSCG00000008192
ENSG00000075568
Transmembrane protein 131
Low tissue specificity
Detected in all
TMEM243
ENSSSCG00000025326
ENSG00000135185
Transmembrane protein 243
Low tissue specificity
Detected in all
TNFAIP2
ENSSSCG00000036612
ENSG00000185215
TNF alpha induced protein 2
Low tissue specificity
Detected in many
TNFRSF1A
ENSSSCG00000000708
ENSG00000067182
Tumor necrosis factor receptor superfamily member 1A precursor
Low tissue specificity
Detected in all
TNFRSF6B
ENSSSCG00000038671
ENSG00000243509
TNF receptor superfamily member 6b
Tissue enhanced
Detected in many
adrenal gland:
45.6
mesothelial tissue:
11.9
TNIP1
ENSSSCG00000017091
ENSG00000145901
TNFAIP3-interacting protein 1
Low tissue specificity
Detected in all
TOR4A
ENSSSCG00000005845
ENSG00000198113
Torsin family 4 member A
Tissue enhanced
Detected in many
stomach:
22.5
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TPST2
ENSSSCG00000009963
ENSG00000128294
Protein-tyrosine sulfotransferase 2 precursor
Low tissue specificity
Detected in all
TRAFD1
ENSSSCG00000009886
ENSG00000135148
TRAF-type zinc finger domain containing 1
Low tissue specificity
Detected in all
TRIM25
ENSSSCG00000017614
ENSG00000121060
Tripartite motif containing 25
Low tissue specificity
Detected in many
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