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Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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260 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ELK3
ENSSSCG00000023803
ENSG00000111145
ELK3, ETS transcription factor
Low tissue specificity
Detected in many
ELK4
ENSSSCG00000025182
ENSG00000158711
ELK4, ETS transcription factor
Low tissue specificity
Detected in all
ELMSAN1
ENSSSCG00000002350
ENSG00000156030
ELM2 and Myb/SANT domain containing 1
Low tissue specificity
Detected in all
EML3
ENSSSCG00000013061
ENSG00000149499
Echinoderm microtubule associated protein like 3
Low tissue specificity
Detected in all
ESYT1
ENSSSCG00000000379
ENSG00000139641
Extended synaptotagmin 1
Low tissue specificity
Detected in all
ETV3
ENSSSCG00000024970
ENSG00000117036
ETS variant 3
Low tissue specificity
Detected in all
F11R
ENSSSCG00000006369
ENSG00000158769
Junctional adhesion molecule A precursor
Low tissue specificity
Detected in many
FAM126A
ENSSSCG00000015386
ENSG00000122591
Family with sequence similarity 126 member A
Low tissue specificity
Detected in all
FAM212A
ENSSSCG00000033410
ENSG00000185614
Family with sequence similarity 212 member A
Low tissue specificity
Detected in all
FCGRT
ENSSSCG00000003187
ENSG00000104870
IgG receptor FcRn large subunit p51 precursor
Low tissue specificity
Detected in all
FCHO2
ENSSSCG00000022661
ENSG00000157107
FCH domain only 2
Low tissue specificity
Detected in all
FCHSD1
ENSSSCG00000014390
ENSG00000197948
FCH and double SH3 domains 1
Low tissue specificity
Detected in many
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FES
ENSSSCG00000001818
ENSG00000182511
FES proto-oncogene, tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
55.7
FEZ2
ENSSSCG00000008503
ENSG00000171055
Fasciculation and elongation protein zeta 2
Low tissue specificity
Detected in all
FKBP5
ENSSSCG00000001549
ENSG00000096060
Peptidyl-prolyl cis-trans isomerase FKBP5
Low tissue specificity
Detected in all
FLNB
ENSSSCG00000011471
ENSG00000136068
Filamin B
Low tissue specificity
Detected in all
FLT3LG
ENSSSCG00000003167
ENSG00000090554
Fms related tyrosine kinase 3 ligand
Low tissue specificity
Detected in all
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
GATA6
ENSSSCG00000003702
ENSG00000141448
Transcription factor GATA-6
Tissue enhanced
Detected in many
adrenal gland:
48.9
heart:
39.4
ovary:
36.9
stomach:
41.6
GCH1
ENSSSCG00000035715
ENSG00000131979
GTP cyclohydrolase 1
Tissue enhanced
Detected in all
ovary:
25.6
pineal gland:
29.0
GLIPR2
ENSSSCG00000031236
ENSG00000122694
GLI pathogenesis related 2
Low tissue specificity
Detected in all
GPNMB
ENSSSCG00000032241
ENSG00000136235
Transmembrane glycoprotein NMB precursor
Tissue enhanced
Detected in many
cervix:
50.5
lung:
48.5
ovary:
64.0
GPR182
ENSSSCG00000037701
ENSG00000166856
G protein-coupled receptor 182
Tissue enhanced
Detected in many
liver:
15.5
lymphoid tissue:
19.2
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GSDMD
ENSSSCG00000006955
ENSG00000104518
Gasdermin D
Low tissue specificity
Detected in all
GUSB
ENSSSCG00000007739
ENSG00000169919
Beta-glucuronidase precursor
Tissue enhanced
Detected in all
ovary:
55.6
HDAC7
ENSSSCG00000027859
ENSG00000061273
Histone deacetylase 7
Low tissue specificity
Detected in all
HYAL1
ENSSSCG00000011404
ENSG00000114378
Hyaluronidase-1 precursor
Tissue enhanced
Detected in many
gallbladder:
31.6
large intestine:
32.2
stomach:
37.6
HYAL3
ENSSSCG00000011402
ENSG00000186792
Hyaluronidase-3 precursor
Low tissue specificity
Detected in many
IER5
ENSSSCG00000015541
ENSG00000162783
Immediate early response gene 5 protein
Low tissue specificity
Detected in all
IFFO1
ENSSSCG00000000695
ENSG00000010295
Intermediate filament family orphan 1
Low tissue specificity
Detected in all
IKBKB
ENSSSCG00000007030
ENSG00000104365
Inhibitor of nuclear factor kappa-B kinase subunit beta
Low tissue specificity
Detected in all
IL15
ENSSSCG00000009051
ENSG00000164136
Interleukin-15 precursor
Tissue enhanced
Detected in many
choroid plexus:
25.5
male glands:
26.7
IL16
ENSSSCG00000001787
ENSG00000172349
Interleukin 16
Tissue enhanced
Detected in many
brain:
33.7
cartilage:
33.1
lymphoid tissue:
27.4
mesothelial tissue:
27.3
vagus nerve:
24.3
IL17RA
ENSSSCG00000000765
ENSG00000177663
Interleukin 17 receptor A
Low tissue specificity
Detected in all
IL1RL1
ENSSSCG00000008159
ENSG00000115602
Interleukin 1 receptor like 1
Group enriched
Detected in many
gallbladder:
53.2
smooth muscle:
37.6
IL4R
ENSSSCG00000007817
ENSG00000077238
Interleukin-4 receptor subunit alpha precursor
Low tissue specificity
Detected in many
IQGAP1
ENSSSCG00000001814
ENSG00000140575
IQ motif containing GTPase activating protein 1
Low tissue specificity
Detected in all
IRAK3
ENSSSCG00000000475
ENSG00000090376
Interleukin 1 receptor associated kinase 3
Low tissue specificity
Detected in all
IRF2BP2
ENSSSCG00000038132
ENSG00000168264
Interferon regulatory factor 2 binding protein 2
Low tissue specificity
Detected in all
ITGB4
ENSSSCG00000017204
ENSG00000132470
Integrin subunit beta 4
Tissue enhanced
Detected in many
vagus nerve:
116.2
ITPR2
ENSSSCG00000000555
ENSG00000123104
Inositol 1,4,5-trisphosphate receptor type 2
Low tissue specificity
Detected in many
ITPR3
ENSSSCG00000001518
ENSG00000096433
Inositol 1,4,5-trisphosphate receptor type 3
Tissue enhanced
Detected in many
stomach:
78.1
ITPRIP
ENSSSCG00000010613
ENSG00000148841
Inositol 1,4,5-trisphosphate receptor interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
KCTD12
ENSSSCG00000009468
ENSG00000178695
Potassium channel tetramerization domain containing 12
Tissue enhanced
Detected in many
adrenal gland:
93.4
KCTD20
ENSSSCG00000001562
ENSG00000112078
Potassium channel tetramerization domain containing 20
Low tissue specificity
Detected in all
KHNYN
ENSSSCG00000001984
ENSG00000100441
KH and NYN domain containing
Tissue enhanced
Detected in all
stomach:
51.1
KIAA0040
ENSSSCG00000040719
ENSG00000235750
KIAA0040
Tissue enhanced
Detected in many
cartilage:
42.1
kidney:
33.7
lymphoid tissue:
35.5
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