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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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TISSUE SPECIFIC PROTEOME
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400 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STK38L
ENSSSCG00000022288
ENSG00000211455
Serine/threonine kinase 38 like
Low tissue specificity
Detected in all
STT3A
ENSSSCG00000015214
ENSG00000134910
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Low tissue specificity
Detected in all
STT3B
ENSSSCG00000011229
ENSG00000163527
STT3B, catalytic subunit of the oligosaccharyltransferase complex
Low tissue specificity
Detected in all
SUCLG2
ENSSSCG00000011501
ENSG00000172340
Succinate-CoA ligase GDP-forming beta subunit
Low tissue specificity
Detected in all
SUMF1
ENSSSCG00000011532
ENSG00000144455
Sulfatase-modifying factor 1 precursor
Tissue enhanced
Detected in all
male glands:
63.6
SUPT3H
ENSSSCG00000001709
ENSG00000196284
SPT3 homolog, SAGA and STAGA complex component
Low tissue specificity
Detected in all
SURF4
ENSSSCG00000040710
ENSG00000148248
Surfeit 4
Low tissue specificity
Detected in all
SYS1-DBNDD2
ENSSSCG00000007395
SYS1-DBNDD2 readthrough (NMD candidate)
Low tissue specificity
Detected in all
SYVN1
ENSSSCG00000027057
ENSG00000162298
Synoviolin 1
Low tissue specificity
Detected in all
SZRD1
ENSSSCG00000031083
ENSG00000055070
SUZ RNA binding domain containing 1
Low tissue specificity
Detected in all
TAMM41
ENSSSCG00000011578
ENSG00000144559
TAM41 mitochondrial translocator assembly and maintenance homolog
Low tissue specificity
Detected in all
TBC1D8B
ENSSSCG00000022993
ENSG00000133138
TBC1 domain family member 8B
Tissue enhanced
Detected in many
male glands:
40.1
TBRG4
ENSSSCG00000016732
ENSG00000136270
Protein TBRG4
Low tissue specificity
Detected in all
TEX264
ENSSSCG00000011424
ENSG00000164081
Testis expressed 264
Low tissue specificity
Detected in all
TGFBR1
ENSSSCG00000005382
ENSG00000106799
TGF-beta receptor type-1 precursor
Low tissue specificity
Detected in all
TM9SF4
ENSSSCG00000007246
ENSG00000101337
Transmembrane 9 superfamily member 4
Low tissue specificity
Detected in all
TMED3
ENSSSCG00000001773
ENSG00000166557
Transmembrane emp24 domain-containing protein 3 precursor
Tissue enhanced
Detected in all
male glands:
55.0
ovary:
47.0
TMED4
ENSSSCG00000016744
ENSG00000158604
Transmembrane p24 trafficking protein 4
Low tissue specificity
Detected in all
TMED9
ENSSSCG00000014036
ENSG00000184840
Transmembrane p24 trafficking protein 9
Low tissue specificity
Detected in all
TMEM11
ENSSSCG00000034040
ENSG00000178307
Transmembrane protein 11
Low tissue specificity
Detected in all
TMEM115
ENSSSCG00000011411
ENSG00000126062
Transmembrane protein 115
Low tissue specificity
Detected in all
TMEM179B
ENSSSCG00000032696
ENSG00000185475
Transmembrane protein 179B
Low tissue specificity
Detected in all
TMEM219
ENSSSCG00000021010
ENSG00000149932
Transmembrane protein 219
Tissue enhanced
Detected in many
male glands:
48.2
TMEM223
ENSSSCG00000038711
ENSG00000168569
Transmembrane protein 223
Low tissue specificity
Detected in all
TMEM260
ENSSSCG00000005062
ENSG00000070269
Transmembrane protein 260
Low tissue specificity
Detected in all
TMEM87B
ENSSSCG00000026954
ENSG00000153214
Transmembrane protein 87B
Low tissue specificity
Detected in all
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
TOR1A
ENSSSCG00000034518
ENSG00000136827
Torsin-1A precursor
Low tissue specificity
Detected in all
TOR1AIP2
ENSSSCG00000035741
ENSG00000169905
Torsin A interacting protein 2
Low tissue specificity
Detected in all
TPT1
ENSSSCG00000040929
ENSG00000133112
Translationally-controlled tumor protein
Tissue enhanced
Detected in all
male glands:
510.3
TRAM1
ENSSSCG00000006193
ENSG00000067167
Translocation associated membrane protein 1
Tissue enhanced
Detected in all
male glands:
108.4
TWSG1
ENSSSCG00000039663
ENSG00000128791
Twisted gastrulation BMP signaling modulator 1
Low tissue specificity
Detected in all
U2AF1L5
ENSSSCG00000033653
ENSG00000275895
U2 small nuclear RNA auxiliary factor 1 like 5
Low tissue specificity
Detected in all
UBC
ENSSSCG00000029226
ENSG00000150991
Ubiquitin C
Low tissue specificity
Detected in all
UBE2Z
ENSSSCG00000025638
ENSG00000159202
Ubiquitin conjugating enzyme E2 Z
Low tissue specificity
Detected in all
UFD1
ENSSSCG00000010121
ENSG00000070010
Ubiquitin recognition factor in ER associated degradation 1
Low tissue specificity
Detected in all
USB1
ENSSSCG00000002807
ENSG00000103005
U6 snRNA phosphodiesterase
Low tissue specificity
Detected in all
USP38
ENSSSCG00000009049
ENSG00000170185
Ubiquitin specific peptidase 38
Low tissue specificity
Detected in all
WBP1
ENSSSCG00000035061
ENSG00000239779
WW domain binding protein 1
Low tissue specificity
Detected in all
WIPI1
ENSSSCG00000017260
ENSG00000070540
WD repeat domain phosphoinositide-interacting protein 1
Tissue enhanced
Detected in all
male glands:
52.0
XBP1
ENSSSCG00000030996
ENSG00000100219
X-box-binding protein 1 isoform XBP1(S)
Tissue enhanced
Detected in all
male glands:
252.4
XRCC6
ENSSSCG00000000059
ENSG00000196419
X-ray repair cross-complementing protein 6
Low tissue specificity
Detected in all
YBEY
ENSSSCG00000033116
ENSG00000182362
YbeY metallopeptidase (putative)
Low tissue specificity
Detected in all
YIF1A
ENSSSCG00000012953
ENSG00000174851
Yip1 interacting factor homolog A, membrane trafficking protein
Low tissue specificity
Detected in all
YIPF2
ENSSSCG00000013634
ENSG00000130733
Yip1 domain family member 2
Tissue enhanced
Detected in all
male glands:
78.4
YIPF3
ENSSSCG00000033627
ENSG00000137207
Protein YIPF3
Low tissue specificity
Detected in all
YKT6
ENSSSCG00000016750
ENSG00000106636
Synaptobrevin homolog YKT6
Low tissue specificity
Detected in all
ZBTB38
ENSSSCG00000022073
ENSG00000177311
Zinc finger and BTB domain-containing protein 38
Low tissue specificity
Detected in all
ZC3H10
ENSSSCG00000033568
ENSG00000135482
Zinc finger CCCH-type containing 10
Low tissue specificity
Detected in all
ZDHHC5
ENSSSCG00000013178
ENSG00000156599
Zinc finger DHHC-type containing 5
Low tissue specificity
Detected in all
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