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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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400 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PIGT
ENSSSCG00000021861
ENSG00000124155
Phosphatidylinositol glycan anchor biosynthesis class T
Low tissue specificity
Detected in all
PIGV
ENSSSCG00000040007
ENSG00000060642
Phosphatidylinositol glycan anchor biosynthesis class V
Low tissue specificity
Detected in all
PIR
ENSSSCG00000012136
ENSG00000087842
Pirin
Tissue enhanced
Detected in all
lens:
47.8
PLPP6
ENSSSCG00000005220
ENSG00000205808
Phospholipid phosphatase 6
Tissue enhanced
Detected in all
male glands:
31.2
PNRC1
ENSSSCG00000039953
ENSG00000146278
Proline rich nuclear receptor coactivator 1
Low tissue specificity
Detected in all
POLR2E
ENSSSCG00000021472
ENSG00000099817
RNA polymerase II subunit E
Low tissue specificity
Detected in all
PPIB
ENSSSCG00000034137
ENSG00000166794
Peptidylprolyl isomerase B
Low tissue specificity
Detected in all
PPP1CA
ENSSSCG00000012913
ENSG00000172531
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit
Low tissue specificity
Detected in all
PPP1R15B
ENSSSCG00000015282
ENSG00000158615
Protein phosphatase 1 regulatory subunit 15B
Low tissue specificity
Detected in all
PPP4C
ENSSSCG00000036817
ENSG00000149923
Protein phosphatase 4 catalytic subunit
Low tissue specificity
Detected in all
PRCC
ENSSSCG00000006467
ENSG00000143294
Papillary renal cell carcinoma (translocation-associated)
Low tissue specificity
Detected in all
PRDX4
ENSSSCG00000012171
ENSG00000123131
Peroxiredoxin 4
Low tissue specificity
Detected in all
PRPF8
ENSSSCG00000017817
ENSG00000174231
Pre-mRNA processing factor 8
Low tissue specificity
Detected in all
QARS
ENSSSCG00000032031
ENSG00000172053
Glutaminyl-tRNA synthetase
Low tissue specificity
Detected in all
RACK1
ENSSSCG00000029724
ENSG00000204628
Receptor of activated protein C kinase 1 Receptor of activated protein C kinase 1, N-terminally processed
Low tissue specificity
Detected in all
RALY
ENSSSCG00000007275
ENSG00000125970
RALY heterogeneous nuclear ribonucleoprotein
Low tissue specificity
Detected in all
RBPJ
ENSSSCG00000022155
ENSG00000168214
Recombination signal binding protein for immunoglobulin kappa J region
Low tissue specificity
Detected in all
RCE1
ENSSSCG00000012927
ENSG00000173653
Ras converting CAAX endopeptidase 1
Low tissue specificity
Detected in all
RELL1
ENSSSCG00000008772
ENSG00000181826
RELT like 1
Tissue enhanced
Detected in all
male glands:
82.5
RER1
ENSSSCG00000026626
ENSG00000157916
Retention in endoplasmic reticulum sorting receptor 1
Low tissue specificity
Detected in all
RHBDD1
ENSSSCG00000016243
ENSG00000144468
Rhomboid domain containing 1
Low tissue specificity
Detected in all
RIOK3
ENSSSCG00000029518
ENSG00000101782
RIO kinase 3
Tissue enriched
Detected in all
lens:
141.3
RNF114
ENSSSCG00000036129
E3 ubiquitin-protein ligase RNF114
Low tissue specificity
Detected in all
RNF19A
ENSSSCG00000006066
ENSG00000034677
E3 ubiquitin-protein ligase RNF19A
Low tissue specificity
Detected in all
RNF38
ENSSSCG00000005343
ENSG00000137075
Ring finger protein 38
Tissue enhanced
Detected in all
testis:
114.8
RNF5
ENSSSCG00000001436
ENSG00000204308
E3 ubiquitin-protein ligase RNF5
Low tissue specificity
Detected in all
RPL10
ENSSSCG00000035997
60S ribosomal protein L10
Tissue enhanced
Detected in all
lens:
361.8
RPL10A
ENSSSCG00000001543
ENSG00000198755
Ribosomal protein L10a
Tissue enhanced
Detected in all
male glands:
248.5
RPL18
ENSSSCG00000025928
ENSG00000063177
Ribosomal protein L18
Low tissue specificity
Detected in all
RPL19
ENSSSCG00000017509
ENSG00000108298
Ribosomal protein L19
Low tissue specificity
Detected in all
RPL23
ENSSSCG00000038880
ENSG00000125691
60S ribosomal protein L23
Low tissue specificity
Detected in all
RPL3
ENSSSCG00000040494
60S ribosomal protein L3
Low tissue specificity
Detected in all
RPL35
ENSSSCG00000034227
60S ribosomal protein L35
Low tissue specificity
Detected in all
RPL37
ENSSSCG00000033326
ENSG00000145592
60S ribosomal protein L37
Tissue enhanced
Detected in all
male glands:
183.0
RPL5
ENSSSCG00000006899
60S ribosomal protein L5
Low tissue specificity
Detected in all
RPL6
ENSSSCG00000039130
60S ribosomal protein L6
Low tissue specificity
Detected in all
RPL7
ENSSSCG00000032111
60S ribosomal protein L7
Low tissue specificity
Detected in all
RPL7A
ENSSSCG00000035904
ENSG00000148303
Ribosomal protein L7a
Tissue enhanced
Detected in all
lens:
376.7
RPL8
ENSSSCG00000029830
ENSG00000161016
Ribosomal protein L8
Low tissue specificity
Detected in all
RPLP0
ENSSSCG00000036014
60S acidic ribosomal protein P0
Tissue enhanced
Detected in all
lens:
310.2
RPLP2
ENSSSCG00000012842
60S acidic ribosomal protein P2
Low tissue specificity
Detected in all
RPN1
ENSSSCG00000011612
ENSG00000163902
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor
Low tissue specificity
Detected in all
RPN2
ENSSSCG00000028227
ENSG00000118705
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 precursor
Tissue enhanced
Detected in all
ovary:
108.1
RPS11
ENSSSCG00000003165
ENSG00000142534
40S ribosomal protein S11
Low tissue specificity
Detected in all
RPS12
ENSSSCG00000004177
40S ribosomal protein S12
Low tissue specificity
Detected in all
RPS15
ENSSSCG00000033169
ENSG00000115268
40S ribosomal protein S15
Low tissue specificity
Detected in all
RPS15A
ENSSSCG00000035768
ENSG00000134419
Ribosomal protein S15a
Low tissue specificity
Detected in all
RPS17
ENSSSCG00000027358
ENSG00000182774
40S ribosomal protein S17
Tissue enhanced
Detected in all
male glands:
385.4
RPS18
ENSSSCG00000001502
40S ribosomal protein S18
Low tissue specificity
Detected in all
RPS20
ENSSSCG00000040470
40S ribosomal protein S20
Low tissue specificity
Detected in all
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