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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
H2AFJ
ENSSSCG00000039307
ENSG00000246705
H2A histone family member J
Low tissue specificity
Detected in all
HDGF
ENSSSCG00000006468
ENSG00000143321
Heparin binding growth factor
Low tissue specificity
Detected in all
HEATR5A
ENSSSCG00000001970
ENSG00000129493
HEAT repeat containing 5A
Low tissue specificity
Detected in all
HERPUD1
ENSSSCG00000040663
ENSG00000051108
Homocysteine inducible ER protein with ubiquitin like domain 1
Low tissue specificity
Detected in all
HEXB
ENSSSCG00000014073
ENSG00000049860
Hexosaminidase subunit beta
Group enriched
Detected in many
epididymis:
222.2
male glands:
59.9
HIPK3
ENSSSCG00000013312
ENSG00000110422
Homeodomain interacting protein kinase 3
Tissue enhanced
Detected in all
lens:
111.4
HIST1H2BD
ENSSSCG00000021411
ENSG00000158373
Histone H2B type 1-D
Tissue enhanced
Detected in many
liver:
21.9
ovary:
17.5
pineal gland:
24.0
HNRNPF
ENSSSCG00000010203
ENSG00000169813
Heterogeneous nuclear ribonucleoprotein F
Low tissue specificity
Detected in all
HOMEZ
ENSSSCG00000028190
ENSG00000215271
Homeobox and leucine zipper encoding
Tissue enhanced
Detected in all
testis:
53.1
HSD11B1L
ENSSSCG00000030546
ENSG00000167733
Hydroxysteroid 11-beta dehydrogenase 1 like
Tissue enhanced
Detected in all
lens:
85.2
HSD17B14
ENSSSCG00000003138
ENSG00000087076
Hydroxysteroid 17-beta dehydrogenase 14
Tissue enhanced
Detected in all
kidney:
90.5
liver:
62.6
HSPA5
ENSSSCG00000005601
ENSG00000044574
Heat shock protein family A (Hsp70) member 5
Low tissue specificity
Detected in all
HYOU1
ENSSSCG00000015106
ENSG00000149428
Hypoxia up-regulated 1
Tissue enhanced
Detected in all
epididymis:
103.3
HYPK
ENSSSCG00000038436
ENSG00000242028
Huntingtin interacting protein K
Low tissue specificity
Detected in all
ICMT
ENSSSCG00000003369
ENSG00000116237
Protein-S-isoprenylcysteine O-methyltransferase
Low tissue specificity
Detected in all
ILVBL
ENSSSCG00000013830
ENSG00000105135
IlvB acetolactate synthase like
Low tissue specificity
Detected in all
INSIG1
ENSSSCG00000016420
ENSG00000186480
Insulin-induced gene 1 protein
Tissue enhanced
Detected in all
liver:
61.1
IPO4
ENSSSCG00000002000
ENSG00000196497
Importin 4
Low tissue specificity
Detected in all
JAK1
ENSSSCG00000003809
ENSG00000162434
Tyrosine-protein kinase JAK1
Low tissue specificity
Detected in all
JMJD8
ENSSSCG00000007988
ENSG00000161999
Jumonji domain containing 8
Low tissue specificity
Detected in all
JPT2
ENSSSCG00000008019
ENSG00000206053
Hematological and neurological expressed 1-like protein
Low tissue specificity
Detected in all
KARS
ENSSSCG00000002704
ENSG00000065427
Lysyl-tRNA synthetase
Low tissue specificity
Detected in all
KDELR2
ENSSSCG00000031432
ENSG00000136240
KDEL endoplasmic reticulum protein retention receptor 2
Tissue enhanced
Detected in all
male glands:
91.3
KIAA2013
ENSSSCG00000003432
ENSG00000116685
KIAA2013
Low tissue specificity
Detected in all
KRTCAP2
ENSSSCG00000006527
ENSG00000163463
Keratinocyte-associated protein 2
Low tissue specificity
Detected in all
LGALS8
ENSSSCG00000010146
ENSG00000116977
Galectin-8
Low tissue specificity
Detected in all
LMAN1
ENSSSCG00000004908
ENSG00000074695
Lectin, mannose binding 1
Tissue enhanced
Detected in all
male glands:
69.5
LMAN2
ENSSSCG00000014040
ENSG00000169223
Lectin, mannose binding 2
Tissue enhanced
Detected in all
epididymis:
93.5
LONRF1
ENSSSCG00000006968
ENSG00000154359
LON peptidase N-terminal domain and ring finger 1
Low tissue specificity
Detected in all
LPCAT3
ENSSSCG00000027205
ENSG00000111684
Lysophosphatidylcholine acyltransferase 3
Low tissue specificity
Detected in all
LRRC42
ENSSSCG00000029698
ENSG00000116212
Leucine rich repeat containing 42
Tissue enhanced
Detected in all
lens:
68.3
LSG1
ENSSSCG00000011827
ENSG00000041802
Large 60S subunit nuclear export GTPase 1
Low tissue specificity
Detected in all
LSM2
ENSSSCG00000039021
ENSG00000204392
U6 snRNA-associated Sm-like protein LSm2
Low tissue specificity
Detected in all
LY96
ENSSSCG00000006175
ENSG00000154589
Lymphocyte antigen 96
Low tissue specificity
Detected in all
MAGT1
ENSSSCG00000012435
ENSG00000102158
Magnesium transporter 1
Low tissue specificity
Detected in all
MAPK14
ENSSSCG00000001556
ENSG00000112062
Mitogen-activated protein kinase 14
Low tissue specificity
Detected in all
MAPK1IP1L
ENSSSCG00000005054
ENSG00000168175
Mitogen-activated protein kinase 1 interacting protein 1 like
Low tissue specificity
Detected in all
MARCH8
ENSSSCG00000010403
ENSG00000165406
Membrane associated ring-CH-type finger 8
Low tissue specificity
Detected in all
MBOAT1
ENSSSCG00000001078
ENSG00000172197
Membrane bound O-acyltransferase domain containing 1
Tissue enriched
Detected in many
lens:
111.9
MFSD2B
ENSSSCG00000008590
ENSG00000205639
Major facilitator superfamily domain containing 2B
Low tissue specificity
Detected in all
MFSD5
ENSSSCG00000000264
ENSG00000182544
Major facilitator superfamily domain containing 5
Low tissue specificity
Detected in all
MGAT1
ENSSSCG00000014538
ENSG00000131446
Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Low tissue specificity
Detected in all
MLEC
ENSSSCG00000009914
ENSG00000110917
Malectin
Tissue enhanced
Detected in all
male glands:
75.1
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MOB1A
ENSSSCG00000039221
ENSG00000114978
MOB kinase activator 1A
Low tissue specificity
Detected in all
MOGS
ENSSSCG00000022786
ENSG00000115275
Mannosyl-oligosaccharide glucosidase
Low tissue specificity
Detected in all
MPV17L2
ENSSSCG00000013896
ENSG00000254858
MPV17 mitochondrial inner membrane protein like 2
Low tissue specificity
Detected in all
MRPL12
ENSSSCG00000033148
ENSG00000262814
Mitochondrial ribosomal protein L12
Low tissue specificity
Detected in all
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