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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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130 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
SEL1L3
ENSSSCG00000022446
ENSG00000091490
SEL1L family member 3
Tissue enhanced
Detected in many
brain:
46.9
esophagus:
60.4
SFTA2
ENSSSCG00000037154
ENSG00000196260
Surfactant associated 2
Tissue enhanced
Detected in some
epididymis:
133.2
stomach:
37.8
SH3BGRL2
ENSSSCG00000032015
ENSG00000198478
SH3 domain binding glutamate rich protein like 2
Tissue enhanced
Detected in many
large intestine:
64.3
lens:
119.2
SLC22A18
ENSSSCG00000012855
ENSG00000110628
Solute carrier family 22 member 18
Tissue enhanced
Detected in many
kidney:
18.1
liver:
31.6
SLC25A19
ENSSSCG00000017208
ENSG00000125454
Mitochondrial thiamine pyrophosphate carrier
Low tissue specificity
Detected in all
SLC26A9
ENSSSCG00000040720
ENSG00000174502
Solute carrier family 26 member 9
Group enriched
Detected in some
salivary gland:
40.3
stomach:
39.4
SLC35A3
ENSSSCG00000006871
ENSG00000117620
UDP-N-acetylglucosamine transporter
Tissue enhanced
Detected in all
male glands:
43.8
SLC44A4
ENSSSCG00000001419
ENSG00000204385
Choline transporter-like protein 4
Tissue enhanced
Detected in many
gallbladder:
43.4
large intestine:
70.7
stomach:
57.5
upper respiratory system:
59.4
SLC5A1
ENSSSCG00000010036
ENSG00000100170
Sodium/glucose cotransporter 1
Tissue enhanced
Detected in many
ductus deferens:
32.3
gallbladder:
27.8
small intestine:
95.9
upper respiratory system:
37.0
SLC6A14
ENSSSCG00000022372
ENSG00000268104
Solute carrier family 6 member 14
Tissue enhanced
Detected in some
esophagus:
16.5
gallbladder:
23.1
large intestine:
16.9
male glands:
12.2
salivary gland:
12.8
upper respiratory system:
22.5
SLC9A4
ENSSSCG00000008155
ENSG00000180251
Solute carrier family 9 member A4
Group enriched
Detected in some
breast:
12.9
kidney:
17.6
stomach:
48.7
thyroid gland:
13.6
SPACA4
ENSSSCG00000025441
ENSG00000177202
Sperm acrosome membrane-associated protein 4 precursor
Tissue enriched
Detected in some
testis:
101.4
STYK1
ENSSSCG00000000634
ENSG00000060140
Serine/threonine/tyrosine kinase 1
Tissue enhanced
Detected in some
large intestine:
24.3
male glands:
14.9
stomach:
81.4
TERT
ENSSSCG00000017118
ENSG00000164362
Telomerase reverse transcriptase
Tissue enhanced
Detected in many
small intestine:
13.6
stomach:
14.5
TFF3
ENSSSCG00000022857
ENSG00000160180
Trefoil factor 3 precursor
Group enriched
Detected in many
male glands:
394.8
upper respiratory system:
123.4
TGM3
ENSSSCG00000026043
ENSG00000125780
Transglutaminase 3
Tissue enriched
Detected in some
stomach:
124.6
TIFAB
ENSSSCG00000038110
ENSG00000255833
TIFA inhibitor
Tissue enhanced
Detected in many
large intestine:
11.2
stomach:
10.6
TLR3
ENSSSCG00000015801
ENSG00000164342
Toll-like receptor 3 precursor
Low tissue specificity
Detected in all
TMC5
ENSSSCG00000007868
ENSG00000103534
Transmembrane channel like 5
Tissue enhanced
Detected in some
male glands:
26.2
small intestine:
33.4
stomach:
24.6
upper respiratory system:
34.3
TMCC3
ENSSSCG00000000906
ENSG00000057704
Transmembrane and coiled-coil domain family 3
Tissue enhanced
Detected in all
stomach:
36.3
TMEM45B
ENSSSCG00000015241
ENSG00000151715
Transmembrane protein 45B
Tissue enhanced
Detected in all
large intestine:
42.3
TMEM54
ENSSSCG00000026455
ENSG00000121900
Transmembrane protein 54
Group enriched
Detected in many
large intestine:
74.6
stomach:
93.8
TMEM61
ENSSSCG00000025097
ENSG00000143001
Transmembrane protein 61
Low tissue specificity
Detected in all
TMIGD2
ENSSSCG00000013504
ENSG00000167664
Transmembrane and immunoglobulin domain containing 2
Tissue enhanced
Detected in some
large intestine:
6.8
small intestine:
5.6
stomach:
14.1
TMPRSS4
ENSSSCG00000015086
ENSG00000137648
Transmembrane serine protease 4
Tissue enhanced
Detected in all
ductus deferens:
33.2
large intestine:
46.9
TNS4
ENSSSCG00000017470
ENSG00000131746
Tensin 4
Tissue enhanced
Detected in many
cornea:
29.6
mouth:
29.0
skin:
77.8
stomach:
28.0
TRAPPC6A
ENSSSCG00000035374
ENSG00000007255
Trafficking protein particle complex 6A
Low tissue specificity
Detected in all
TRIM29
ENSSSCG00000015126
ENSG00000137699
Tripartite motif containing 29
Tissue enhanced
Detected in many
cornea:
65.8
mouth:
53.2
skin:
53.0
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
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