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Human disease related genes
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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253 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SEC16B
ENSSSCG00000039332
ENSG00000120341
SEC16 homolog B, endoplasmic reticulum export factor
Tissue enhanced
Detected in many
liver:
49.9
stomach:
26.0
SEMA4G
ENSSSCG00000029533
ENSG00000095539
Semaphorin 4G
Tissue enhanced
Detected in all
liver:
79.5
stomach:
30.8
SERHL2
ENSSSCG00000034350
ENSG00000183569
Serine hydrolase like 2
Tissue enhanced
Detected in all
kidney:
41.1
pineal gland:
38.9
SHH
ENSSSCG00000016416
ENSG00000164690
Sonic hedgehog protein preproprotein
Group enriched
Detected in some
epididymis:
13.3
stomach:
31.7
urinary bladder:
33.0
SLC10A2
ENSSSCG00000026317
ENSG00000125255
Ileal sodium/bile acid cotransporter
Tissue enriched
Detected in some
small intestine:
70.7
SLC15A1
ENSSSCG00000009513
ENSG00000088386
Solute carrier family 15 member 1
Tissue enhanced
Detected in all
small intestine:
47.0
SLC26A3
ENSSSCG00000021813
ENSG00000091138
Chloride anion exchanger
Group enriched
Detected in some
gallbladder:
26.5
large intestine:
96.4
male glands:
74.9
small intestine:
26.5
SLC28A2
ENSSSCG00000004673
ENSG00000137860
Solute carrier family 28 member 2
Tissue enhanced
Detected in many
small intestine:
18.2
SLC35D1
ENSSSCG00000032043
ENSG00000116704
Solute carrier family 35 member D1
Tissue enhanced
Detected in all
large intestine:
33.3
liver:
26.4
SLC35G1
ENSSSCG00000027230
ENSG00000176273
Solute carrier family 35 member G1
Tissue enhanced
Detected in many
dura mater:
23.4
small intestine:
16.5
SLC39A4
ENSSSCG00000005905
ENSG00000147804
Solute carrier family 39 member 4
Tissue enhanced
Detected in all
small intestine:
27.2
SLC51A
ENSSSCG00000011846
ENSG00000163959
Organic solute transporter subunit alpha
Tissue enhanced
Detected in all
small intestine:
36.5
SLC51B
ENSSSCG00000004923
ENSG00000186198
Solute carrier family 51 beta subunit
Tissue enhanced
Detected in all
small intestine:
59.0
SLC5A5
ENSSSCG00000013890
ENSG00000105641
Sodium/iodide cotransporter
Group enriched
Detected in some
choroid plexus:
68.1
stomach:
42.9
thyroid gland:
100.2
SLC6A19
ENSSSCG00000017120
ENSG00000174358
Solute carrier family 6 member 19
Group enriched
Detected in some
kidney:
37.1
small intestine:
51.7
SLC7A9
ENSSSCG00000022948
ENSG00000021488
B(0,+)-type amino acid transporter 1
Tissue enhanced
Detected in all
kidney:
28.4
small intestine:
44.6
SLC9A3
ENSSSCG00000039413
ENSG00000066230
Solute carrier family 9 member A3
Group enriched
Detected in some
gallbladder:
88.1
kidney:
22.6
large intestine:
50.9
male glands:
73.6
stomach:
40.8
SLC9C1
ENSSSCG00000023918
ENSG00000172139
Solute carrier family 9 member C1
Tissue enriched
Detected in some
testis:
35.6
SMIM31
ENSSSCG00000038890
ENSG00000248771
Small integral membrane protein 31
Tissue enhanced
Detected in some
large intestine:
20.0
small intestine:
13.5
SP5
ENSSSCG00000038355
ENSG00000204335
Sp5 transcription factor
Tissue enhanced
Detected in many
gallbladder:
20.2
SPAI-2
ENSSSCG00000033675
Sus scrofa elafin family member (WAP-3), mRNA.
Group enriched
Detected in some
large intestine:
63.8
small intestine:
105.7
SPAM1
ENSSSCG00000016601
ENSG00000106304
Hyaluronidase PH-20
Tissue enhanced
Detected in some
large intestine:
12.1
small intestine:
8.5
testis:
44.7
SPINK4
ENSSSCG00000010997
ENSG00000122711
Serine protease inhibitor Kazal-type 4 precursor
Group enriched
Detected in some
large intestine:
110.4
small intestine:
40.0
stomach:
31.0
SRMS
ENSSSCG00000036706
ENSG00000125508
Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Tissue enhanced
Detected in some
male glands:
7.3
skin:
7.9
testis:
23.8
SULT1B1
ENSSSCG00000032374
ENSG00000173597
Sulfotransferase family 1B member 1
Tissue enhanced
Detected in all
large intestine:
40.1
SYT8
ENSSSCG00000023537
ENSG00000149043
Synaptotagmin 8
Group enriched
Detected in some
adrenal gland:
24.0
stomach:
56.2
urinary bladder:
21.8
TAAR1
ENSSSCG00000035807
ENSG00000146399
Trace amine associated receptor 1
Tissue enhanced
Detected in some
kidney:
12.3
lung:
4.6
stomach:
15.3
TAS2R41
ENSSSCG00000016457
ENSG00000221855
Taste 2 receptor member 41
Group enriched
Detected in some
kidney:
3.7
large intestine:
4.6
TCN1
ENSSSCG00000039252
ENSG00000134827
Transcobalamin 1
Group enriched
Detected in all
small intestine:
207.7
stomach:
156.3
TFF2
ENSSSCG00000024320
ENSG00000160181
Trefoil factor 2
Group enriched
Detected in some
small intestine:
670.0
stomach:
368.3
TLX2
ENSSSCG00000022499
ENSG00000115297
T cell leukemia homeobox 2
Tissue enhanced
Detected in some
adrenal gland:
9.6
pineal gland:
6.7
small intestine:
4.9
TM6SF2
ENSSSCG00000031759
ENSG00000213996
Transmembrane 6 superfamily member 2
Group enriched
Detected in some
large intestine:
20.9
liver:
39.9
small intestine:
34.3
TMEM171
ENSSSCG00000014066
ENSG00000157111
Transmembrane protein 171
Tissue enhanced
Detected in some
kidney:
16.0
large intestine:
57.8
lens:
29.1
small intestine:
16.2
TMEM236
ENSSSCG00000011037
ENSG00000148483
Transmembrane protein 236
Group enriched
Detected in some
large intestine:
19.1
small intestine:
26.7
TMEM253
ENSSSCG00000030437
ENSG00000232070
Transmembrane protein 253
Tissue enhanced
Detected in all
small intestine:
27.4
TMEM72
ENSSSCG00000025787
ENSG00000187783
Transmembrane protein 72
Tissue enhanced
Detected in some
choroid plexus:
65.8
kidney:
38.7
large intestine:
14.1
TMEM82
ENSSSCG00000003466
ENSG00000162460
Transmembrane protein 82
Group enriched
Detected in some
kidney:
2.5
large intestine:
8.3
liver:
9.7
small intestine:
5.0
stomach:
5.8
TMEM92
ENSSSCG00000037168
ENSG00000167105
Transmembrane protein 92
Tissue enhanced
Detected in all
large intestine:
31.6
TMIGD1
ENSSSCG00000017798
ENSG00000182271
Transmembrane and immunoglobulin domain containing 1
Group enriched
Detected in some
kidney:
70.7
large intestine:
55.4
small intestine:
103.3
TMPRSS3
ENSSSCG00000022568
ENSG00000160183
Transmembrane serine protease 3
Tissue enriched
Detected in some
stomach:
21.2
TPK1
ENSSSCG00000015462
ENSG00000196511
Thiamin pyrophosphokinase 1
Low tissue specificity
Detected in all
TRIM15
ENSSSCG00000001235
ENSG00000204610
Tripartite motif-containing protein 15
Tissue enhanced
Detected in all
large intestine:
23.6
male glands:
26.6
TRIM40
ENSSSCG00000001236
ENSG00000204614
Tripartite motif-containing protein 40
Tissue enhanced
Detected in all
large intestine:
31.9
small intestine:
22.1
TRIM6
ENSSSCG00000032133
ENSG00000121236
Tripartite motif containing 6
Tissue enhanced
Detected in some
large intestine:
4.2
mesothelial tissue:
2.1
TRPA1
ENSSSCG00000006186
ENSG00000104321
Transient receptor potential cation channel subfamily A member 1
Tissue enhanced
Detected in many
large intestine:
18.2
urinary bladder:
25.5
TUBAL3
ENSSSCG00000029077
ENSG00000178462
Tubulin alpha like 3
Low tissue specificity
Detected in all
UGDH
ENSSSCG00000030150
ENSG00000109814
UDP-glucose 6-dehydrogenase
Tissue enhanced
Detected in all
large intestine:
67.9
UNC5CL
ENSSSCG00000027922
ENSG00000124602
Unc-5 family C-terminal like
Tissue enhanced
Detected in all
large intestine:
24.3
small intestine:
23.8
USH1C
ENSSSCG00000013377
ENSG00000006611
USH1 protein network component harmonin
Group enriched
Detected in some
gallbladder:
16.1
kidney:
16.8
large intestine:
36.4
small intestine:
28.2
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
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