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UMAP gene cluster
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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160 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000035189
ENSG00000171227
Tissue enhanced
Detected in many
kidney:
60.9
male glands:
26.3
na
ENSSSCG00000036242
Group enriched
Detected in some
liver:
30.9
small intestine:
17.5
na
ENSSSCG00000036369
Group enriched
Detected in many
esophagus:
10.3
male glands:
32.0
salivary gland:
28.2
upper respiratory system:
12.9
na
ENSSSCG00000036508
Tissue enhanced
Detected in some
large intestine:
1.6
salivary gland:
3.9
na
ENSSSCG00000036999
ENSG00000171195
Tissue enriched
Detected in some
salivary gland:
803.4
na
ENSSSCG00000037006
ENSG00000102313
Group enriched
Detected in some
male glands:
7.2
upper respiratory system:
3.7
na
ENSSSCG00000037049
Tissue enhanced
Detected in many
breast:
18.9
salivary gland:
16.5
na
ENSSSCG00000037635
Tissue enriched
Detected in some
liver:
26.1
na
ENSSSCG00000038692
Group enriched
Detected in some
esophagus:
5.9
male glands:
17.1
salivary gland:
9.3
upper respiratory system:
6.8
na
ENSSSCG00000040812
Tissue enhanced
Detected in many
liver:
28.0
NAGS
ENSSSCG00000024179
ENSG00000161653
N-acetylglutamate synthase, mitochondrial
Tissue enriched
Detected in some
liver:
60.8
NPC1L1
ENSSSCG00000016746
ENSG00000015520
NPC1 like intracellular cholesterol transporter 1
Group enriched
Detected in all
gallbladder:
10.5
liver:
28.8
small intestine:
35.8
NR1H4
ENSSSCG00000000875
ENSG00000012504
Bile acid receptor
Tissue enhanced
Detected in some
adrenal gland:
22.5
liver:
68.0
small intestine:
44.1
thyroid gland:
35.6
NR1I2
ENSSSCG00000011890
ENSG00000144852
Nuclear receptor subfamily 1 group I member 2
Tissue enhanced
Detected in all
large intestine:
34.3
liver:
64.9
small intestine:
39.5
ODAM
ENSSSCG00000009266
ENSG00000109205
Odontogenic ameloblast-associated protein precursor
Tissue enhanced
Detected in some
esophagus:
8.0
salivary gland:
16.7
upper respiratory system:
14.9
OSGIN1
ENSSSCG00000032115
ENSG00000140961
Oxidative stress induced growth inhibitor 1
Tissue enhanced
Detected in many
adrenal gland:
46.7
liver:
67.6
testis:
35.1
OTC
ENSSSCG00000012236
Ornithine carbamoyltransferase, mitochondrial
Tissue enriched
Detected in all
liver:
86.4
PAX9
ENSSSCG00000001942
ENSG00000198807
Paired box 9
Group enriched
Detected in some
esophagus:
41.4
male glands:
77.7
mouth:
25.3
salivary gland:
21.1
upper respiratory system:
33.8
PCK1
ENSSSCG00000007507
ENSG00000124253
Phosphoenolpyruvate carboxykinase, cytosolic
Group enriched
Detected in some
adipose tissue:
36.3
kidney:
141.2
liver:
139.0
PCK2
ENSSSCG00000002009
ENSG00000100889
Phosphoenolpyruvate carboxykinase
Group enriched
Detected in many
kidney:
61.6
liver:
92.9
PDZK1
ENSSSCG00000006693
ENSG00000174827
PDZ domain containing 1
Tissue enhanced
Detected in many
epididymis:
69.2
kidney:
109.6
small intestine:
49.1
PGLYRP1
ENSSSCG00000038688
ENSG00000008438
Peptidoglycan recognition protein 1 precursor
Tissue enhanced
Detected in many
bone marrow:
20.7
dura mater:
24.7
upper respiratory system:
70.5
PHEROC
ENSSSCG00000013067
ENSG00000110484
Pheromaxein C subunit precursor
Tissue enriched
Detected in some
salivary gland:
801.2
PIMREG
ENSSSCG00000017893
ENSG00000129195
PICALM interacting mitotic regulator
Tissue enhanced
Detected in many
adrenal gland:
13.7
male glands:
14.0
mouth:
12.8
PLA2G12B
ENSSSCG00000010291
ENSG00000138308
Group XIIB secretory phospholipase A2-like protein precursor
Tissue enriched
Detected in some
liver:
29.3
POR
ENSSSCG00000038320
ENSG00000127948
NADPH--cytochrome P450 reductase
Low tissue specificity
Detected in all
PPP3CC
ENSSSCG00000032622
ENSG00000120910
Protein phosphatase 3 catalytic subunit gamma
Low tissue specificity
Detected in all
PRSS33
ENSSSCG00000030518
ENSG00000103355
Serine protease 33
Tissue enhanced
Detected in some
male glands:
20.5
salivary gland:
10.3
upper respiratory system:
20.2
PTI
ENSSSCG00000007410
Pancreatic trypsin inhibitor precursor
Tissue enhanced
Detected in some
lung:
20.3
stomach:
22.8
upper respiratory system:
60.4
RAB17
ENSSSCG00000016328
ENSG00000124839
Ras-related protein Rab-17
Group enriched
Detected in some
kidney:
31.3
liver:
51.9
small intestine:
19.3
RHBG
ENSSSCG00000035121
ENSG00000132677
Ammonium transporter Rh type B
Tissue enhanced
Detected in all
kidney:
41.8
skin:
21.6
SCGB1D1
ENSSSCG00000013068
Secretoglobin family 1D member 1 precursor
Tissue enriched
Detected in some
salivary gland:
1595.9
SEPSECS
ENSSSCG00000025315
ENSG00000109618
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Tissue enhanced
Detected in all
liver:
29.5
SERPINF2
ENSSSCG00000038745
ENSG00000167711
Serpin family F member 2
Tissue enhanced
Detected in some
epididymis:
54.3
kidney:
24.5
liver:
126.1
SFTPD
ENSSSCG00000010334
ENSG00000133661
Pulmonary surfactant-associated protein D
Tissue enriched
Detected in many
lung:
66.8
SLC13A2
ENSSSCG00000017763
ENSG00000007216
Solute carrier family 13 member 2
Tissue enhanced
Detected in some
gallbladder:
12.9
kidney:
56.9
small intestine:
27.1
SLC27A2
ENSSSCG00000004643
ENSG00000140284
Very long-chain acyl-CoA synthetase
Tissue enhanced
Detected in some
kidney:
21.9
liver:
40.8
retina:
11.2
SLC28A1
ENSSSCG00000002632
ENSG00000156222
Sodium/nucleoside cotransporter 1
Low tissue specificity
Detected in all
SLC31A2
ENSSSCG00000023714
ENSG00000136867
Probable low affinity copper uptake protein 2
Tissue enhanced
Detected in many
esophagus:
26.6
salivary gland:
89.5
upper respiratory system:
21.7
SLC39A5
ENSSSCG00000000385
ENSG00000139540
Solute carrier family 39 member 5
Group enriched
Detected in some
kidney:
23.8
liver:
40.4
small intestine:
24.6
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC5A12
ENSSSCG00000013338
ENSG00000148942
Solute carrier family 5 member 12
Group enriched
Detected in some
kidney:
90.9
small intestine:
39.5
SLC5A9
ENSSSCG00000003882
ENSG00000117834
Solute carrier family 5 member 9
Group enriched
Detected in some
kidney:
16.0
liver:
23.5
skin:
48.6
small intestine:
25.3
SOAT2
ENSSSCG00000000260
ENSG00000167780
Sterol O-acyltransferase 2
Tissue enhanced
Detected in all
liver:
40.9
STATH
ENSSSCG00000023797
Statherin precursor
Tissue enriched
Detected in some
salivary gland:
180.8
STEAP4
ENSSSCG00000015299
ENSG00000127954
Metalloreductase STEAP4
Tissue enhanced
Detected in many
cornea:
40.6
TAC4
ENSSSCG00000038057
ENSG00000176358
Tachykinin-4 precursor
Tissue enhanced
Detected in all
esophagus:
29.1
salivary gland:
42.8
upper respiratory system:
25.8
TINAG
ENSSSCG00000001484
ENSG00000137251
Tubulointerstitial nephritis antigen
Tissue enriched
Detected in many
kidney:
119.3
TKFC
ENSSSCG00000013087
ENSG00000149476
Triokinase and FMN cyclase
Tissue enhanced
Detected in all
kidney:
38.7
liver:
42.9
TLCD2
ENSSSCG00000040205
ENSG00000185561
TLC domain containing 2
Tissue enhanced
Detected in all
brain:
20.7
kidney:
19.1
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