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UMAP gene cluster
Pig tissue group category (RNA)
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SERPINA3-2
ENSSSCG00000002487
Alpha-1-antichymotrypsin 2 precursor
Tissue enriched
Detected in some
liver:
185.9
SERPINA4
ENSSSCG00000039378
ENSG00000100665
Serpin family A member 4
Tissue enriched
Detected in some
liver:
44.2
SERPINA5
ENSSSCG00000002481
ENSG00000188488
Serpin family A member 5
Tissue enriched
Detected in some
liver:
208.4
SERPINA6
ENSSSCG00000002475
ENSG00000170099
Corticosteroid-binding globulin precursor
Tissue enriched
Detected in some
liver:
79.4
SERPINA7
ENSSSCG00000012547
ENSG00000123561
Thyroxine-binding globulin precursor
Tissue enriched
Detected in single
liver:
30.7
SERPINC1
ENSSSCG00000015493
ENSG00000117601
Antithrombin-III precursor
Tissue enriched
Detected in some
liver:
265.5
SERPIND1
ENSSSCG00000010093
ENSG00000099937
Serpin family D member 1
Tissue enriched
Detected in some
liver:
171.8
SLC10A1
ENSSSCG00000002313
ENSG00000100652
Solute carrier family 10 member 1
Tissue enriched
Detected in many
liver:
97.1
SLC10A5
ENSSSCG00000033693
ENSG00000253598
Solute carrier family 10 member 5
Tissue enriched
Detected in many
liver:
26.7
SLC16A12
ENSSSCG00000010455
ENSG00000152779
Solute carrier family 16 member 12
Tissue enhanced
Detected in all
kidney:
52.5
liver:
34.1
SLC17A1
ENSSSCG00000001107
ENSG00000124568
Sodium-dependent phosphate transport protein 1
Group enriched
Detected in all
kidney:
107.2
liver:
78.5
SLC17A2
ENSSSCG00000036191
ENSG00000112337
Solute carrier family 17 member 2
Group enriched
Detected in some
epididymis:
26.0
liver:
61.1
SLC22A1
ENSSSCG00000004041
ENSG00000175003
Solute carrier family 22 member 1
Group enriched
Detected in some
kidney:
68.5
liver:
88.0
SLC22A7
ENSSSCG00000027796
ENSG00000137204
Solute carrier family 22 member 7
Tissue enriched
Detected in some
liver:
75.4
SLC25A15
ENSSSCG00000009373
ENSG00000102743
Mitochondrial ornithine transporter 1
Group enriched
Detected in all
kidney:
35.2
liver:
78.2
SLC25A47
ENSSSCG00000002515
ENSG00000140107
Solute carrier family 25 member 47
Tissue enriched
Detected in some
liver:
83.0
SLC27A5
ENSSSCG00000031449
ENSG00000083807
Solute carrier family 27 member 5
Tissue enriched
Detected in many
liver:
100.7
SLC27A6
ENSSSCG00000014257
ENSG00000113396
Solute carrier family 27 member 6
Tissue enhanced
Detected in many
choroid plexus:
22.6
kidney:
34.9
SLC2A2
ENSSSCG00000020927
ENSG00000163581
Solute carrier family 2, facilitated glucose transporter member 2
Tissue enriched
Detected in many
liver:
70.9
SLC37A4
ENSSSCG00000015105
ENSG00000137700
Glucose-6-phosphate exchanger SLC37A4
Tissue enhanced
Detected in all
epididymis:
35.1
liver:
51.8
SLC38A4
ENSSSCG00000026597
ENSG00000139209
Solute carrier family 38 member 4
Tissue enriched
Detected in some
liver:
117.9
SLC45A2
ENSSSCG00000016821
ENSG00000164175
Solute carrier family 45 member 2
Tissue enhanced
Detected in all
liver:
30.6
SLC5A2
ENSSSCG00000024058
ENSG00000140675
Solute carrier family 5 member 2
Tissue enriched
Detected in all
kidney:
43.1
SMCR8
ENSSSCG00000038189
ENSG00000176994
Smith-Magenis syndrome chromosome region, candidate 8
Tissue enhanced
Detected in all
liver:
35.6
SMLR1
ENSSSCG00000033538
ENSG00000256162
Small leucine rich protein 1
Tissue enriched
Detected in many
liver:
25.0
SORD
ENSSSCG00000004679
ENSG00000140263
Sorbitol dehydrogenase
Group enriched
Detected in all
kidney:
31.3
liver:
83.6
male glands:
77.4
thyroid gland:
24.1
SPP2
ENSSSCG00000016315
ENSG00000072080
Secreted phosphoprotein 24 precursor
Tissue enriched
Detected in some
liver:
139.3
SULT2A1
ENSSSCG00000033207
ENSG00000105398
Bile salt sulfotransferase
Tissue enhanced
Detected in all
liver:
61.0
TAS1R2
ENSSSCG00000039973
ENSG00000179002
Taste receptor type 1 member 2 precursor
Tissue enhanced
Detected in some
choroid plexus:
3.6
liver:
3.5
skin:
3.8
TAS2R38
ENSSSCG00000031100
ENSG00000257138
Taste 2 receptor member 38
Low tissue specificity
Detected in many
TAT
ENSSSCG00000002736
ENSG00000198650
Tyrosine aminotransferase
Tissue enriched
Detected in some
liver:
149.8
TDO2
ENSSSCG00000008868
ENSG00000151790
Tryptophan 2,3-dioxygenase
Tissue enriched
Detected in some
liver:
194.1
TDRD15
ENSSSCG00000035036
ENSG00000218819
Tudor domain containing 15
Tissue enriched
Detected in some
liver:
12.5
TECTB
ENSSSCG00000010632
ENSG00000119913
Tectorin beta
Group enriched
Detected in some
epididymis:
38.1
liver:
34.8
TFR2
ENSSSCG00000007671
ENSG00000106327
Transferrin receptor 2
Tissue enriched
Detected in some
liver:
84.5
THOC5
ENSSSCG00000009988
ENSG00000100296
THO complex 5
Low tissue specificity
Detected in all
THPO
ENSSSCG00000023909
ENSG00000090534
Thrombopoietin
Tissue enhanced
Detected in all
liver:
35.8
TLE1
ENSSSCG00000005291
ENSG00000196781
Transducin like enhancer of split 1
Low tissue specificity
Detected in all
TMEM101
ENSSSCG00000017371
ENSG00000091947
Transmembrane protein 101
Tissue enhanced
Detected in all
liver:
40.6
TMEM120B
ENSSSCG00000009808
ENSG00000188735
Transmembrane protein 120B
Low tissue specificity
Detected in all
TMEM150A
ENSSSCG00000008233
ENSG00000168890
Transmembrane protein 150A
Tissue enhanced
Detected in all
liver:
61.8
TMEM86B
ENSSSCG00000003302
ENSG00000180089
Lysoplasmalogenase
Group enriched
Detected in many
gallbladder:
29.8
liver:
69.9
TMEM97
ENSSSCG00000033123
ENSG00000109084
Transmembrane protein 97
Group enriched
Detected in all
liver:
59.1
ovary:
79.5
testis:
21.4
TMPRSS6
ENSSSCG00000026067
ENSG00000187045
Transmembrane serine protease 6
Tissue enriched
Detected in some
liver:
64.8
TTC39C
ENSSSCG00000003710
ENSG00000168234
Tetratricopeptide repeat domain 39C
Tissue enhanced
Detected in all
liver:
43.1
UGT2B31
ENSSSCG00000039276
UDP-glucuronosyltransferase 2B31 precursor
Tissue enriched
Detected in some
liver:
99.1
UOX
ENSSSCG00000022206
Uricase precursor
Tissue enriched
Detected in some
liver:
74.9
UPB1
ENSSSCG00000010060
ENSG00000100024
Beta-ureidopropionase 1
Group enriched
Detected in all
kidney:
78.6
liver:
120.3
UPP2
ENSSSCG00000021938
ENSG00000007001
Uridine phosphorylase 2
Tissue enhanced
Detected in some
kidney:
69.9
liver:
19.3
small intestine:
16.2
UROC1
ENSSSCG00000001823
ENSG00000159650
Urocanate hydratase
Tissue enriched
Detected in all
liver:
93.2
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