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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000039933
Group enriched
Detected in some
liver:
3.4
testis:
2.7
na
ENSSSCG00000039955
Tissue enriched
Detected in some
liver:
6.5
na
ENSSSCG00000039985
ENSG00000198848
Liver carboxylesterase precursor
Tissue enriched
Detected in all
liver:
254.1
na
ENSSSCG00000040085
Tissue enriched
Detected in some
liver:
23.6
na
ENSSSCG00000040088
Group enriched
Detected in many
kidney:
77.5
liver:
282.4
na
ENSSSCG00000040235
Tissue enriched
Detected in single
liver:
10.9
na
ENSSSCG00000040378
Tissue enriched
Detected in some
liver:
20.0
na
ENSSSCG00000040436
Tissue enriched
Detected in some
liver:
31.6
na
ENSSSCG00000040484
Group enriched
Detected in some
cartilage:
24.2
liver:
28.7
na
ENSSSCG00000040711
Tissue enriched
Detected in some
liver:
41.5
na
ENSSSCG00000040754
Tissue enhanced
Detected in many
liver:
5.0
na
ENSSSCG00000040779
ENSG00000160200,ENSG00000274276
Group enriched
Detected in many
epididymis:
23.8
liver:
88.1
na
ENSSSCG00000040788
Tissue enhanced
Detected in some
adipose tissue:
2.0
kidney:
5.5
liver:
4.3
na
ENSSSCG00000040926
Tissue enhanced
Detected in some
kidney:
2.9
testis:
3.5
na
ENSSSCG00000040972
Tissue enhanced
Detected in some
heart:
2.0
liver:
1.2
na
ENSSSCG00000040980
Tissue enriched
Detected in some
liver:
116.5
NAT8
ENSSSCG00000021579
ENSG00000144035
N-acetyltransferase 8 (putative)
Group enriched
Detected in all
kidney:
45.3
liver:
80.8
NLRP11
ENSSSCG00000003314
ENSG00000179873
NLR family pyrin domain containing 11
Tissue enhanced
Detected in some
liver:
1.7
ovary:
1.3
retina:
2.5
NNMT
ENSSSCG00000015054
ENSG00000166741
Nicotinamide N-methyltransferase
Tissue enriched
Detected in single
liver:
48.5
NOTUM
ENSSSCG00000039013
ENSG00000185269
Notum, palmitoleoyl-protein carboxylesterase
Tissue enriched
Detected in many
liver:
58.8
NR0B2
ENSSSCG00000003565
ENSG00000131910
Nuclear receptor subfamily 0 group B member 2
Tissue enhanced
Detected in many
adrenal gland:
18.5
liver:
25.7
NR1I3
ENSSSCG00000006353
ENSG00000143257
Nuclear receptor subfamily 1 group I member 3
Tissue enriched
Detected in many
liver:
60.5
OIT3
ENSSSCG00000010293
ENSG00000138315
Oncoprotein-induced transcript 3 protein precursor
Tissue enriched
Detected in some
liver:
35.5
ONECUT1
ENSSSCG00000004616
ENSG00000169856
One cut homeobox 1
Group enriched
Detected in many
gallbladder:
33.4
liver:
65.8
OR10P1
ENSSSCG00000037147
ENSG00000175398
Olfactory receptor family 10 subfamily P member 1
Tissue enriched
Detected in single
liver:
16.7
OR52N4
ENSSSCG00000038239
ENSG00000181074
Olfactory receptor family 52 subfamily N member 4 (gene/pseudogene)
Tissue enriched
Detected in single
liver:
3.7
OR56B1
ENSSSCG00000014662
ENSG00000181023
Olfactory receptor family 56 subfamily B member 1
Tissue enhanced
Detected in single
liver:
1.2
OR5AU1
ENSSSCG00000032876
ENSG00000169327
Olfactory receptor family 5 subfamily AU member 1
Tissue enhanced
Detected in many
liver:
10.2
PAH
ENSSSCG00000000856
ENSG00000171759
Phenylalanine hydroxylase
Tissue enriched
Detected in some
liver:
213.5
PBLD
ENSSSCG00000025876
ENSG00000108187
Phenazine biosynthesis like protein domain containing
Tissue enhanced
Detected in all
kidney:
44.8
liver:
66.2
PCSK9
ENSSSCG00000025020
ENSG00000169174
Proprotein convertase subtilisin/kexin type 9
Tissue enriched
Detected in some
liver:
95.3
PEX11G
ENSSSCG00000013569
ENSG00000104883
Peroxisomal biogenesis factor 11 gamma
Low tissue specificity
Detected in all
PHKA2
ENSSSCG00000012157
ENSG00000044446
Phosphorylase kinase regulatory subunit alpha 2
Tissue enhanced
Detected in all
liver:
29.9
PKLR
ENSSSCG00000026149
ENSG00000143627
Pyruvate kinase L/R
Tissue enriched
Detected in some
liver:
53.5
PLG
ENSSSCG00000004038
ENSG00000122194
Plasminogen precursor
Tissue enriched
Detected in some
liver:
236.1
PRLH
ENSSSCG00000036981
ENSG00000071677
Prolactin releasing hormone
Group enriched
Detected in some
brain:
12.0
liver:
8.2
PROC
ENSSSCG00000023693
ENSG00000115718
Vitamin K-dependent protein C precursor
Tissue enriched
Detected in some
liver:
156.9
PRODH2
ENSSSCG00000002913
ENSG00000250799
Proline dehydrogenase 2
Group enriched
Detected in some
kidney:
77.2
liver:
41.9
RBKS
ENSSSCG00000038001
ENSG00000171174
Ribokinase
Tissue enhanced
Detected in all
adrenal gland:
40.4
RBP4
ENSSSCG00000010479
ENSG00000138207
Retinol-binding protein 4 precursor
Group enriched
Detected in all
liver:
245.2
pineal gland:
94.9
RBP5
ENSSSCG00000039512
ENSG00000139194
Retinol-binding protein 5
Group enriched
Detected in all
kidney:
79.5
liver:
41.6
RCL1
ENSSSCG00000005217
ENSG00000120158
RNA terminal phosphate cyclase like 1
Tissue enriched
Detected in all
liver:
83.3
RGN
ENSSSCG00000022390
ENSG00000130988
Regucalcin
Tissue enriched
Detected in all
liver:
131.4
RIBC1
ENSSSCG00000012326
ENSG00000158423
RIB43A domain with coiled-coils 1
Tissue enhanced
Detected in all
liver:
28.9
testis:
21.1
SAA4
ENSSSCG00000021847
ENSG00000148965
Serum amyloid A4, constitutive
Group enriched
Detected in some
liver:
38.4
testis:
22.9
SARDH
ENSSSCG00000005740
ENSG00000123453
Sarcosine dehydrogenase, mitochondrial
Group enriched
Detected in many
kidney:
47.3
liver:
73.6
SDR9C7
ENSSSCG00000000415
ENSG00000170426
Short chain dehydrogenase/reductase family 9C member 7
Tissue enriched
Detected in some
liver:
39.0
SEBOX
ENSSSCG00000025748
ENSG00000274529
SEBOX homeobox
Group enriched
Detected in some
liver:
51.3
retina:
20.9
SERPINA1
ENSSSCG00000002476
ENSG00000197249
Alpha-1-antitrypsin precursor
Tissue enhanced
Detected in many
cartilage:
61.3
gallbladder:
123.2
liver:
272.0
SERPINA11
ENSSSCG00000002479
ENSG00000186910
Serpin family A member 11
Tissue enriched
Detected in some
liver:
78.2
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