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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GNMT
ENSSSCG00000033214
ENSG00000124713
Glycine N-methyltransferase
Tissue enriched
Detected in many
liver:
57.7
GPR156
ENSSSCG00000011888
ENSG00000175697
G protein-coupled receptor 156
Tissue enriched
Detected in many
liver:
46.7
GSTZ1
ENSSSCG00000002396
ENSG00000100577
Maleylacetoacetate isomerase
Tissue enhanced
Detected in all
liver:
86.1
GYS2
ENSSSCG00000000577
ENSG00000111713
Glycogen
Tissue enriched
Detected in many
liver:
99.1
HAL
ENSSSCG00000000892
ENSG00000084110
Histidine ammonia-lyase
Tissue enriched
Detected in all
liver:
49.8
HAMP
ENSSSCG00000035436
ENSG00000105697
Hepcidin
Tissue enriched
Detected in some
liver:
71.2
HAO1
ENSSSCG00000027439
ENSG00000101323
Hydroxyacid oxidase 1
Group enriched
Detected in some
kidney:
16.9
liver:
61.9
HAO2
ENSSSCG00000006720
ENSG00000116882
Hydroxyacid oxidase 2
Group enriched
Detected in all
kidney:
103.3
liver:
62.4
HEPACAM2
ENSSSCG00000025870
ENSG00000188175
HEPACAM family member 2
Tissue enhanced
Detected in all
large intestine:
36.4
pituitary gland:
41.9
HGD
ENSSSCG00000021227
ENSG00000113924
Homogentisate 1,2-dioxygenase
Tissue enriched
Detected in many
liver:
91.2
HGFAC
ENSSSCG00000008700
ENSG00000109758
HGF activator
Tissue enriched
Detected in many
liver:
93.5
HOGA1
ENSSSCG00000010523
ENSG00000241935
4-hydroxy-2-oxoglutarate aldolase, mitochondrial
Group enriched
Detected in many
kidney:
67.9
liver:
30.6
HPD
ENSSSCG00000009805
ENSG00000158104
4-hydroxyphenylpyruvate dioxygenase
Tissue enriched
Detected in some
liver:
217.9
HPN
ENSSSCG00000021867
ENSG00000105707
Hepsin
Group enriched
Detected in all
kidney:
43.4
liver:
93.6
male glands:
36.2
HPX
ENSSSCG00000014626
ENSG00000110169
Hemopexin precursor
Tissue enriched
Detected in some
liver:
339.3
HRG
ENSSSCG00000011801
ENSG00000113905
Histidine-rich glycoprotein precursor
Tissue enriched
Detected in some
liver:
413.6
HYAL4
ENSSSCG00000016602
ENSG00000106302
Hyaluronoglucosaminidase 4
Tissue enhanced
Detected in many
liver:
19.1
testis:
22.6
IDO2
ENSSSCG00000023054
ENSG00000188676
Indoleamine 2,3-dioxygenase 2
Group enriched
Detected in many
kidney:
25.2
liver:
48.2
upper respiratory system:
14.4
IGFBP1
ENSSSCG00000016728
ENSG00000146678
Insulin-like growth factor-binding protein 1 precursor
Tissue enriched
Detected in some
liver:
154.0
IL13RA2
ENSSSCG00000012594
ENSG00000123496
Interleukin-13 receptor subunit alpha-2 precursor
Tissue enhanced
Detected in many
liver:
16.9
testis:
10.6
INHBC
ENSSSCG00000037446
ENSG00000175189
Inhibin beta C subunit
Tissue enriched
Detected in single
liver:
53.0
INHBE
ENSSSCG00000000442
ENSG00000139269
Inhibin beta E subunit
Tissue enriched
Detected in single
liver:
28.7
INMT
ENSSSCG00000016676
Indolethylamine N-methyltransferase
Tissue enriched
Detected in many
liver:
77.9
ITIH1
ENSSSCG00000011450
ENSG00000055957
Inter-alpha-trypsin inhibitor heavy chain 1
Tissue enriched
Detected in all
liver:
234.9
ITIH2
ENSSSCG00000011128
ENSG00000151655
Inter-alpha-trypsin inhibitor heavy chain H2 precursor
Tissue enriched
Detected in some
liver:
217.5
IYD
ENSSSCG00000004093
ENSG00000009765
Iodotyrosine deiodinase 1 precursor
Tissue enriched
Detected in many
thyroid gland:
295.1
KLKB1
ENSSSCG00000015799
ENSG00000164344
Plasma kallikrein
Tissue enriched
Detected in many
liver:
71.4
LACTB
ENSSSCG00000004569
ENSG00000103642
Serine beta-lactamase-like protein LACTB, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
36.1
liver:
32.5
LBP
ENSSSCG00000028758
ENSG00000129988
Lipopolysaccharide-binding protein precursor
Tissue enhanced
Detected in all
liver:
65.0
upper respiratory system:
30.6
LECT2
ENSSSCG00000014315
ENSG00000145826
Leukocyte cell derived chemotaxin 2
Tissue enriched
Detected in some
liver:
78.6
MARC2
ENSSSCG00000010826
ENSG00000117791
Mitochondrial amidoxime reducing component 2
Tissue enhanced
Detected in all
kidney:
53.3
liver:
81.3
MASP2
ENSSSCG00000003410
ENSG00000009724
Mannan-binding lectin serine protease 2 precursor
Group enriched
Detected in all
liver:
45.4
lymphoid tissue:
33.7
MAT1A
ENSSSCG00000010337
ENSG00000151224
S-adenosylmethionine synthase
Tissue enriched
Detected in some
liver:
229.1
MBL1
ENSSSCG00000024252
Mannose-binding protein A
Tissue enriched
Detected in all
liver:
76.2
MBL2
ENSSSCG00000010427
ENSG00000165471
Mannose-binding protein C precursor
Tissue enriched
Detected in some
liver:
133.6
MORC1
ENSSSCG00000011937
ENSG00000114487
MORC family CW-type zinc finger 1
Tissue enriched
Detected in some
liver:
32.2
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
MT1A
ENSSSCG00000023684
Metallothionein-1A
Tissue enriched
Detected in all
liver:
134.9
MYO7A
ENSSSCG00000014876
ENSG00000137474
Unconventional myosin-VIIa
Tissue enhanced
Detected in many
adrenal gland:
29.3
kidney:
37.4
na
ENSSSCG00000000854
ENSG00000136011
Group enriched
Detected in some
liver:
43.3
lymphoid tissue:
11.5
na
ENSSSCG00000001776
Tissue enhanced
Detected in some
kidney:
10.2
liver:
7.7
na
ENSSSCG00000002008
ENSG00000100897
Low tissue specificity
Detected in all
na
ENSSSCG00000002483
ENSG00000196136
Tissue enriched
Detected in some
liver:
186.1
na
ENSSSCG00000002486
ENSG00000196136
Tissue enriched
Detected in some
liver:
153.3
na
ENSSSCG00000002749
ENSG00000257017,ENSG00000261701
Haptoglobin Haptoglobin alpha chain Haptoglobin beta chain
Tissue enriched
Detected in some
liver:
402.4
na
ENSSSCG00000002834
Group enriched
Detected in some
epididymis:
38.3
kidney:
24.9
liver:
33.5
na
ENSSSCG00000003703
Tissue enhanced
Detected in some
epididymis:
4.4
ovary:
7.4
na
ENSSSCG00000003889
Group enriched
Detected in some
kidney:
33.2
liver:
12.2
na
ENSSSCG00000003892
Group enriched
Detected in some
kidney:
101.5
liver:
25.8
na
ENSSSCG00000003893
Tissue enriched
Detected in some
kidney:
39.4
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