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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
Congenital disorders of metabolism
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MYPOP
ENSSSCG00000038739
ENSG00000176182
Myb related transcription factor, partner of profilin
Low tissue specificity
Detected in all
na
ENSSSCG00000000220
Low tissue specificity
Detected in many
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000002532
ENSG00000022976
Low tissue specificity
Detected in all
na
ENSSSCG00000003226
ENSG00000105383
Tissue enriched
Detected in many
lymphoid tissue:
45.2
na
ENSSSCG00000003286
Tissue enhanced
Detected in some
lymphoid tissue:
5.1
testis:
4.9
na
ENSSSCG00000003521
Protein Wnt-4
Tissue enhanced
Detected in many
cornea:
49.8
na
ENSSSCG00000003719
ENSG00000134504
BTB/POZ domain-containing protein KCTD1
Tissue enhanced
Detected in all
adrenal gland:
43.8
na
ENSSSCG00000004024
ENSG00000026297
Tissue enhanced
Detected in all
synovial tissue:
65.7
na
ENSSSCG00000004082
Tissue enhanced
Detected in all
cervix:
72.3
na
ENSSSCG00000004145
ENSG00000146386
Tissue enhanced
Detected in many
lymphoid tissue:
30.2
na
ENSSSCG00000004703
ENSG00000223572,ENSG00000237289
Creatine kinase U-type, mitochondrial
Tissue enhanced
Detected in many
gallbladder:
53.4
large intestine:
124.0
retina:
55.7
na
ENSSSCG00000004781
ENSG00000137843,ENSG00000259288
Tissue enhanced
Detected in many
cornea:
23.6
na
ENSSSCG00000005623
Tissue enhanced
Detected in all
epididymis:
76.9
na
ENSSSCG00000005643
ENSG00000167110
Low tissue specificity
Detected in all
na
ENSSSCG00000005934
ENSG00000167632
Tissue enhanced
Detected in all
lens:
90.7
na
ENSSSCG00000006156
ENSG00000076554
Tumor protein D52
Tissue enhanced
Detected in all
male glands:
68.9
na
ENSSSCG00000006851
Tissue enhanced
Detected in all
lymphoid tissue:
43.9
na
ENSSSCG00000007622
ENSG00000106246,ENSG00000248919
Low tissue specificity
Detected in all
na
ENSSSCG00000008576
ENSG00000138101
Tissue enhanced
Detected in all
male glands:
91.3
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000009250
Group enriched
Detected in some
large intestine:
33.2
small intestine:
33.9
na
ENSSSCG00000009458
Tissue enhanced
Detected in some
retina:
3.6
na
ENSSSCG00000010086
ENSG00000161180
Tissue enriched
Detected in many
testis:
47.6
na
ENSSSCG00000010559
ENSG00000186862
Tissue enhanced
Detected in many
vagus nerve:
47.3
na
ENSSSCG00000010719
Low tissue specificity
Detected in all
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000011121
ENSG00000048740
Low tissue specificity
Detected in all
na
ENSSSCG00000011436
ENSG00000173366,ENSG00000239732
Toll-like receptor 9
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
na
ENSSSCG00000012104
ENSG00000146950
Tissue enhanced
Detected in many
kidney:
24.8
male glands:
28.3
na
ENSSSCG00000013172
Low tissue specificity
Detected in some
na
ENSSSCG00000013390
Low tissue specificity
Detected in some
na
ENSSSCG00000013654
ENSG00000105371
Tissue enhanced
Detected in some
dura mater:
6.6
lung:
8.4
lymphoid tissue:
6.8
mesothelial tissue:
6.8
na
ENSSSCG00000013900
ENSG00000105647
Low tissue specificity
Detected in all
na
ENSSSCG00000014267
ENSG00000158987,ENSG00000273217
Low tissue specificity
Detected in all
na
ENSSSCG00000014323
Tissue enriched
Detected in some
urinary bladder:
74.4
na
ENSSSCG00000016006
Tissue enhanced
Detected in many
cartilage:
108.6
male glands:
128.8
na
ENSSSCG00000017103
ENSG00000145545
Tissue enhanced
Detected in many
breast:
42.6
salivary gland:
85.9
testis:
54.3
thyroid gland:
38.3
na
ENSSSCG00000017129
ENSG00000102128,ENSG00000141542,ENSG00000172476
Low tissue specificity
Detected in many
na
ENSSSCG00000017868
ENSG00000083454
Tissue enhanced
Detected in many
heart:
31.3
skeletal muscle:
45.2
na
ENSSSCG00000017987
ENSG00000133026
Tissue enhanced
Detected in all
aorta:
62.8
na
ENSSSCG00000021273
Tissue enhanced
Detected in all
cervix:
83.5
na
ENSSSCG00000021656
ENSG00000160145
Low tissue specificity
Detected in all
na
ENSSSCG00000022120
ENSG00000273274
Tissue enhanced
Detected in many
epididymis:
32.2
na
ENSSSCG00000023060
Tissue enhanced
Detected in some
gallbladder:
6.4
urinary bladder:
6.0
na
ENSSSCG00000023403
Tissue enhanced
Detected in many
breast:
14.5
cartilage:
41.8
testis:
16.2
na
ENSSSCG00000023436
ENSG00000151364
Tissue enhanced
Detected in many
male glands:
21.3
stomach:
21.7
na
ENSSSCG00000024163
Low tissue specificity
Detected in all
na
ENSSSCG00000024486
ENSG00000168172
Low tissue specificity
Detected in all
na
ENSSSCG00000024763
ENSG00000153495
Tissue enhanced
Detected in many
brain:
23.5
testis:
31.7
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