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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040891
Low tissue specificity
Detected in all
na
ENSSSCG00000040906
Low tissue specificity
Detected in all
na
ENSSSCG00000040911
Low tissue specificity
Detected in all
na
ENSSSCG00000040918
Low tissue specificity
Detected in all
na
ENSSSCG00000040938
Low tissue specificity
Detected in many
na
ENSSSCG00000040939
Low tissue specificity
Detected in all
na
ENSSSCG00000040942
Beta-1,4 N-acetylgalactosaminyltransferase 2
Low tissue specificity
Detected in all
na
ENSSSCG00000040958
ENSG00000213281
Low tissue specificity
Detected in all
na
ENSSSCG00000040979
Low tissue specificity
Detected in many
NAALAD2
ENSSSCG00000014933
ENSG00000077616
N-acetylated alpha-linked acidic dipeptidase 2
Low tissue specificity
Detected in all
NBDY
ENSSSCG00000037192
ENSG00000204272
Negative regulator of P-body association
Low tissue specificity
Detected in all
NCAPH
ENSSSCG00000008125
ENSG00000121152
Non-SMC condensin I complex subunit H
Low tissue specificity
Detected in all
NEDD1
ENSSSCG00000000890
ENSG00000139350
Neural precursor cell expressed, developmentally down-regulated 1
Low tissue specificity
Detected in all
NFE2L3
ENSSSCG00000026894
ENSG00000050344
Nuclear factor, erythroid 2 like 3
Low tissue specificity
Detected in all
NHLRC3
ENSSSCG00000037746
ENSG00000188811
NHL repeat containing 3
Low tissue specificity
Detected in all
NIPAL2
ENSSSCG00000031267
ENSG00000104361
NIPA like domain containing 2
Low tissue specificity
Detected in all
NLRP12
ENSSSCG00000003251
ENSG00000142405
NLR family pyrin domain containing 12
Low tissue specificity
Detected in all
NMBR
ENSSSCG00000036250
ENSG00000135577
Neuromedin-B receptor
Low tissue specificity
Detected in all
NMRK1
ENSSSCG00000005272
ENSG00000106733
Nicotinamide riboside kinase 1
Tissue enhanced
Detected in all
liver:
42.4
NMUR2
ENSSSCG00000017076
ENSG00000132911
Neuromedin-U receptor 2
Low tissue specificity
Detected in all
NOC4L
ENSSSCG00000009739
ENSG00000184967
Nucleolar complex associated 4 homolog
Low tissue specificity
Detected in all
NPAS4
ENSSSCG00000012942
ENSG00000174576
Neuronal PAS domain protein 4
Tissue enhanced
Detected in all
adrenal gland:
21.3
NSMCE2
ENSSSCG00000037755
ENSG00000156831
NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Low tissue specificity
Detected in all
NT5DC4
ENSSSCG00000008092
ENSG00000144130
5'-nucleotidase domain containing 4
Low tissue specificity
Detected in all
NTF3
ENSSSCG00000033544
ENSG00000185652
Neurotrophin 3
Low tissue specificity
Detected in all
NTRK1
ENSSSCG00000006464
ENSG00000198400
Neurotrophic receptor tyrosine kinase 1
Tissue enriched
Detected in all
adrenal gland:
37.7
NXNL1
ENSSSCG00000040328
ENSG00000171773
Nucleoredoxin like 1
Low tissue specificity
Detected in all
OCSTAMP
ENSSSCG00000007448
ENSG00000149635
Osteoclast stimulatory transmembrane protein
Low tissue specificity
Detected in all
OLR1
ENSSSCG00000000647
ENSG00000173391
Oxidized low-density lipoprotein receptor 1
Tissue enhanced
Detected in all
mesothelial tissue:
44.0
ORC2
ENSSSCG00000016098
ENSG00000115942
Origin recognition complex subunit 2
Low tissue specificity
Detected in all
OSCAR
ENSSSCG00000003259
ENSG00000170909
Osteoclast associated, immunoglobulin-like receptor
Low tissue specificity
Detected in all
OSTN
ENSSSCG00000031478
ENSG00000188729
Osteocrin precursor
Tissue enhanced
Detected in all
dura mater:
23.9
OVCA2
ENSSSCG00000028078
ENSG00000262664
OVCA2, serine hydrolase domain containing
Low tissue specificity
Detected in all
PAEP
ENSSSCG00000040042
ENSG00000122133
Beta-lactoglobulin-1A/1C
Tissue enriched
Detected in some
breast:
314.8
PARP11
ENSSSCG00000000728
ENSG00000111224
Poly(ADP-ribose) polymerase family member 11
Low tissue specificity
Detected in all
PARP2
ENSSSCG00000002143
ENSG00000129484
Poly(ADP-ribose) polymerase 2
Low tissue specificity
Detected in all
PBK
ENSSSCG00000009671
ENSG00000168078
Lymphokine-activated killer T-cell-originated protein kinase
Low tissue specificity
Detected in all
PCDHA1
ENSSSCG00000026471
ENSG00000204970
Protocadherin alpha 1
Low tissue specificity
Detected in all
PDCL3
ENSSSCG00000033885
ENSG00000115539
Phosducin like 3
Low tissue specificity
Detected in all
PDSS2
ENSSSCG00000036168
ENSG00000164494
Decaprenyl-diphosphate synthase subunit 2
Low tissue specificity
Detected in all
PDZD3
ENSSSCG00000027710
ENSG00000172367
PDZ domain containing 3
Tissue enhanced
Detected in all
kidney:
41.1
PFKFB1
ENSSSCG00000024814
ENSG00000158571
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1
Tissue enhanced
Detected in all
liver:
52.2
skeletal muscle:
64.5
PIGB
ENSSSCG00000032619
ENSG00000069943
Phosphatidylinositol glycan anchor biosynthesis class B
Low tissue specificity
Detected in all
PIGM
ENSSSCG00000038017
ENSG00000143315
Phosphatidylinositol glycan anchor biosynthesis class M
Low tissue specificity
Detected in all
PIN4
ENSSSCG00000023312
ENSG00000102309
Peptidylprolyl cis/trans isomerase, NIMA-interacting 4
Low tissue specificity
Detected in all
PIWIL4
ENSSSCG00000014959
ENSG00000134627
Piwi-like protein 4
Low tissue specificity
Detected in all
PLA2G1B
ENSSSCG00000029501
ENSG00000170890
Phospholipase A2, major isoenzyme precursor
Low tissue specificity
Detected in all
PLA2G5
ENSSSCG00000034429
ENSG00000127472
Phospholipase A2 group V
Low tissue specificity
Detected in all
PLAUR
ENSSSCG00000032434
ENSG00000011422
Plasminogen activator, urokinase receptor
Low tissue specificity
Detected in all
PLEKHA8
ENSSSCG00000016682
ENSG00000106086
Pleckstrin homology domain containing A8
Low tissue specificity
Detected in all
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