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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMIE
ENSSSCG00000038857
ENSG00000181585
Transmembrane inner ear
Group enriched
Detected in some
brain:
23.0
pituitary gland:
30.2
TPD52L1
ENSSSCG00000004225
ENSG00000111907
Tumor protein D52 like 1
Tissue enhanced
Detected in many
brain:
50.0
choroid plexus:
38.9
salivary gland:
61.3
TREM2
ENSSSCG00000039270
ENSG00000095970
Triggering receptor expressed on myeloid cells 2 precursor
Tissue enhanced
Detected in all
brain:
20.4
TRIM2
ENSSSCG00000029200
ENSG00000109654
Tripartite motif containing 2
Low tissue specificity
Detected in all
TRIM36
ENSSSCG00000014214
ENSG00000152503
Tripartite motif containing 36
Tissue enhanced
Detected in many
brain:
18.7
cervix:
24.4
testis:
89.9
TRO
ENSSSCG00000039027
ENSG00000067445
Trophinin
Tissue enhanced
Detected in many
brain:
11.4
liver:
21.4
skeletal muscle:
20.9
TRPC1
ENSSSCG00000011681
ENSG00000144935
Short transient receptor potential channel 1
Tissue enhanced
Detected in all
retina:
51.3
TSPAN33
ENSSSCG00000016570
ENSG00000158457
Tetraspanin 33
Tissue enhanced
Detected in many
brain:
60.3
breast:
28.9
male glands:
41.7
TSPAN5
ENSSSCG00000029813
ENSG00000168785
Tetraspanin 5
Tissue enhanced
Detected in many
brain:
34.8
TSPYL1
ENSSSCG00000004438
ENSG00000189241
TSPY like 1
Low tissue specificity
Detected in all
TSPYL4
ENSSSCG00000004439
ENSG00000187189
TSPY like 4
Tissue enhanced
Detected in many
brain:
81.1
pineal gland:
45.2
retina:
25.6
TSPYL5
ENSSSCG00000033112
ENSG00000180543
TSPY like 5
Tissue enhanced
Detected in many
brain:
19.9
pituitary gland:
18.7
TTBK2
ENSSSCG00000004718
ENSG00000128881
Tau tubulin kinase 2
Low tissue specificity
Detected in all
TTC3
ENSSSCG00000012062
ENSG00000182670
Tetratricopeptide repeat domain 3
Low tissue specificity
Detected in all
TTC9
ENSSSCG00000020701
ENSG00000133985
Tetratricopeptide repeat domain 9
Tissue enhanced
Detected in many
brain:
22.7
choroid plexus:
54.1
TTLL1
ENSSSCG00000000035
ENSG00000100271
Tubulin tyrosine ligase like 1
Tissue enhanced
Detected in all
brain:
39.0
lens:
40.5
testis:
33.7
TTYH1
ENSSSCG00000003271
ENSG00000167614
Tweety family member 1
Tissue enhanced
Detected in all
brain:
46.8
TUBB2B
ENSSSCG00000033655
ENSG00000137285
Tubulin beta-2B chain
Tissue enhanced
Detected in many
brain:
54.1
lens:
23.5
TUBB4A
ENSSSCG00000013545
ENSG00000104833
Tubulin beta 4A class IVa
Tissue enriched
Detected in some
brain:
146.9
TUBG2
ENSSSCG00000036106
ENSG00000037042
Tubulin gamma 2
Low tissue specificity
Detected in all
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
TYRO3
ENSSSCG00000004744
ENSG00000092445
TYRO3 protein tyrosine kinase
Group enriched
Detected in many
brain:
22.4
lens:
65.8
UCHL1
ENSSSCG00000022945
ENSG00000154277
Ubiquitin carboxyl-terminal hydrolase isozyme L1
Tissue enhanced
Detected in many
brain:
100.1
lens:
44.2
pineal gland:
29.0
pituitary gland:
33.0
UCK2
ENSSSCG00000039867
ENSG00000143179
Uridine-cytidine kinase 2
Low tissue specificity
Detected in many
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
USP27X
ENSSSCG00000012305
ENSG00000273820
Ubiquitin specific peptidase 27, X-linked
Tissue enhanced
Detected in many
adrenal gland:
17.8
brain:
19.9
pituitary gland:
17.4
USP35
ENSSSCG00000014892
ENSG00000118369
Ubiquitin specific peptidase 35
Low tissue specificity
Detected in many
USP54
ENSSSCG00000010302
ENSG00000166348
Ubiquitin specific peptidase 54
Tissue enhanced
Detected in all
brain:
41.8
male glands:
45.2
VAT1L
ENSSSCG00000002696
ENSG00000171724
Vesicle amine transport 1 like
Group enriched
Detected in many
adrenal gland:
98.1
brain:
32.7
choroid plexus:
77.6
ovary:
32.6
WDR17
ENSSSCG00000015766
ENSG00000150627
WD repeat domain 17
Tissue enhanced
Detected in many
male glands:
21.0
retina:
52.1
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WNK3
ENSSSCG00000012332
ENSG00000196632
WNK lysine deficient protein kinase 3
Tissue enhanced
Detected in many
pituitary gland:
15.2
WNT7A
ENSSSCG00000039010
ENSG00000154764
Wnt family member 7A
Tissue enriched
Detected in some
lens:
157.5
WNT7B
ENSSSCG00000027365
ENSG00000188064
Wnt family member 7B
Tissue enhanced
Detected in many
cornea:
37.3
kidney:
30.4
lens:
49.8
skin:
17.5
WSB2
ENSSSCG00000009853
ENSG00000176871
WD repeat and SOCS box containing 2
Tissue enhanced
Detected in all
brain:
95.4
lens:
82.2
WSCD1
ENSSSCG00000017894
ENSG00000179314
WSC domain containing 1
Tissue enhanced
Detected in many
brain:
41.5
pineal gland:
18.9
YPEL4
ENSSSCG00000037892
ENSG00000166793
Yippee like 4
Tissue enhanced
Detected in many
brain:
22.0
ZC2HC1A
ENSSSCG00000006162
ENSG00000104427
Zinc finger C2HC-type containing 1A
Low tissue specificity
Detected in all
ZC4H2
ENSSSCG00000027657
ENSG00000126970
Zinc finger C4H2 domain-containing protein
Low tissue specificity
Detected in all
ZCWPW2
ENSSSCG00000038376
ENSG00000206559
Zinc finger CW-type and PWWP domain containing 2
Tissue enhanced
Detected in many
brain:
27.0
lens:
16.4
testis:
21.6
ZDHHC24
ENSSSCG00000021891
ENSG00000174165
Zinc finger DHHC-type containing 24
Low tissue specificity
Detected in all
ZFP14
ENSSSCG00000032673
ENSG00000142065
ZFP14 zinc finger protein
Low tissue specificity
Detected in all
ZFP37
ENSSSCG00000005475
ENSG00000136866
ZFP37 zinc finger protein
Tissue enhanced
Detected in many
brain:
10.0
ZFP57
ENSSSCG00000001247
ENSG00000204644
Zinc finger protein 57 homolog
Tissue enriched
Detected in some
brain:
105.9
ZFP69B
ENSSSCG00000003981
ENSG00000187801
ZFP69 zinc finger protein B
Tissue enhanced
Detected in all
lens:
55.9
ZFP82
ENSSSCG00000031915
ENSG00000181007
ZFP82 zinc finger protein
Low tissue specificity
Detected in all
ZFP92
ENSSSCG00000012768
ENSG00000189420
ZFP92 zinc finger protein
Tissue enhanced
Detected in many
choroid plexus:
26.8
ZFYVE16
ENSSSCG00000014121
ENSG00000039319
Zinc finger FYVE-type containing 16
Tissue enhanced
Detected in all
brain:
62.6
ZFYVE28
ENSSSCG00000008689
ENSG00000159733
Zinc finger FYVE-type containing 28
Tissue enhanced
Detected in many
brain:
20.0
ZFYVE9
ENSSSCG00000003863
ENSG00000157077
Zinc finger FYVE-type containing 9
Low tissue specificity
Detected in all
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