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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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281 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC35B1
ENSSSCG00000033731
ENSG00000121073
Solute carrier family 35 member B1
Low tissue specificity
Detected in all
SLC38A9
ENSSSCG00000030343
ENSG00000177058
Solute carrier family 38 member 9
Low tissue specificity
Detected in all
SLC5A11
ENSSSCG00000033071
ENSG00000158865
Sodium/myo-inositol cotransporter 2
Low tissue specificity
Detected in all
SLC7A3
ENSSSCG00000024346
ENSG00000165349
Cationic amino acid transporter 3
Tissue enhanced
Detected in all
ductus deferens:
21.8
SMIM8
ENSSSCG00000004300
ENSG00000111850
Small integral membrane protein 8
Low tissue specificity
Detected in all
SS18L1
ENSSSCG00000035448
ENSG00000184402
SS18L1, nBAF chromatin remodeling complex subunit
Low tissue specificity
Detected in all
STPG2
ENSSSCG00000009188
ENSG00000163116
Sperm tail PG-rich repeat containing 2
Low tissue specificity
Detected in all
TAF1B
ENSSSCG00000008637
ENSG00000115750
TATA-box binding protein associated factor, RNA polymerase I subunit B
Low tissue specificity
Detected in all
TARS2
ENSSSCG00000026395
ENSG00000143374
Threonyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
TARSL2
ENSSSCG00000005781
ENSG00000185418
Threonyl-tRNA synthetase like 2
Tissue enhanced
Detected in all
liver:
40.6
TBRG1
ENSSSCG00000025661
ENSG00000154144
Transforming growth factor beta regulator 1
Low tissue specificity
Detected in all
TIMM29
ENSSSCG00000013635
ENSG00000142444
Translocase of inner mitochondrial membrane 29
Low tissue specificity
Detected in all
TIPIN
ENSSSCG00000004942
ENSG00000075131
TIMELESS interacting protein
Low tissue specificity
Detected in all
TMEM186
ENSSSCG00000033311
ENSG00000184857
Transmembrane protein 186
Low tissue specificity
Detected in all
TMEM199
ENSSSCG00000040883
ENSG00000244045
Transmembrane protein 199
Low tissue specificity
Detected in all
TMEM38B
ENSSSCG00000039896
ENSG00000095209
Trimeric intracellular cation channel type B
Low tissue specificity
Detected in all
TP53I3
ENSSSCG00000008586
ENSG00000115129
Tumor protein p53 inducible protein 3
Low tissue specificity
Detected in all
UQCC3
ENSSSCG00000038370
ENSG00000204922
Ubiquinol-cytochrome c reductase complex assembly factor 3
Low tissue specificity
Detected in all
VSTM2B
ENSSSCG00000023921
ENSG00000187135
V-set and transmembrane domain containing 2B
Low tissue specificity
Detected in all
VWA5A
ENSSSCG00000015175
ENSG00000110002
Von Willebrand factor A domain containing 5A
Low tissue specificity
Detected in all
XKR6
ENSSSCG00000009693
ENSG00000171044
XK related 6
Tissue enhanced
Detected in all
brain:
25.1
XXYLT1
ENSSSCG00000035414
ENSG00000173950
Xyloside xylosyltransferase 1
Low tissue specificity
Detected in all
YAE1D1
ENSSSCG00000030497
ENSG00000241127
Yae1 domain containing 1
Low tissue specificity
Detected in all
ZDHHC15
ENSSSCG00000012426
ENSG00000102383
Zinc finger DHHC-type containing 15
Low tissue specificity
Detected in all
ZNF19
ENSSSCG00000021770
ENSG00000157429
Zinc finger protein 19
Low tissue specificity
Detected in all
ZNF385B
ENSSSCG00000023181
ENSG00000144331
Zinc finger protein 385B
Tissue enhanced
Detected in all
cartilage:
105.1
male glands:
62.9
ZNF454
ENSSSCG00000027351
ENSG00000178187
Zinc finger protein 454
Low tissue specificity
Detected in all
ZNF461
ENSSSCG00000029875
ENSG00000197808
Zinc finger protein 461
Low tissue specificity
Detected in all
ZNF550
ENSSSCG00000035387
ENSG00000251369
Zinc finger protein 550
Low tissue specificity
Detected in all
ZNF852
ENSSSCG00000022462
ENSG00000178917
Zinc finger protein 852
Low tissue specificity
Detected in all
ZSCAN31
ENSSSCG00000025335
ENSG00000235109
Zinc finger and SCAN domain containing 31
Low tissue specificity
Detected in all
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