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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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281 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038998
Tissue enhanced
Detected in many
heart:
20.7
na
ENSSSCG00000039088
Tissue enhanced
Detected in many
retina:
21.1
na
ENSSSCG00000039092
Low tissue specificity
Detected in many
na
ENSSSCG00000039180
Low tissue specificity
Detected in all
na
ENSSSCG00000039234
Tissue enhanced
Detected in all
brain:
21.1
na
ENSSSCG00000039587
Low tissue specificity
Detected in all
na
ENSSSCG00000039629
Low tissue specificity
Detected in many
na
ENSSSCG00000039676
Low tissue specificity
Detected in many
na
ENSSSCG00000039743
ENSG00000164543
Tissue enhanced
Detected in some
lymphoid tissue:
13.7
retina:
5.5
na
ENSSSCG00000039774
ENSG00000196110
Low tissue specificity
Detected in all
na
ENSSSCG00000039810
Tissue enhanced
Detected in many
brain:
30.1
pineal gland:
23.9
retina:
31.5
na
ENSSSCG00000039993
Low tissue specificity
Detected in many
na
ENSSSCG00000040121
Tissue enriched
Detected in many
heart:
35.1
na
ENSSSCG00000040129
Tissue enhanced
Detected in many
brain:
67.8
cervix:
39.8
na
ENSSSCG00000040195
Tissue enhanced
Detected in many
liver:
28.0
na
ENSSSCG00000040227
Low tissue specificity
Detected in all
na
ENSSSCG00000040240
Low tissue specificity
Detected in many
na
ENSSSCG00000040362
Low tissue specificity
Detected in many
na
ENSSSCG00000040374
Low tissue specificity
Detected in many
na
ENSSSCG00000040444
Tissue enhanced
Detected in many
breast:
23.2
na
ENSSSCG00000040491
Low tissue specificity
Detected in many
na
ENSSSCG00000040525
Low tissue specificity
Detected in all
na
ENSSSCG00000040588
Low tissue specificity
Detected in many
na
ENSSSCG00000040763
Low tissue specificity
Detected in all
na
ENSSSCG00000040771
Low tissue specificity
Detected in many
na
ENSSSCG00000040809
Tissue enhanced
Detected in many
thyroid gland:
11.0
NAE1
ENSSSCG00000035639
ENSG00000159593
NEDD8 activating enzyme E1 subunit 1
Low tissue specificity
Detected in all
NLRC4
ENSSSCG00000026213
ENSG00000091106
NLR family CARD domain containing 4
Low tissue specificity
Detected in some
NLRX1
ENSSSCG00000015113
ENSG00000160703
NLR family member X1
Tissue enhanced
Detected in all
retina:
64.9
NME1
ENSSSCG00000038348
ENSG00000239672
Nucleoside diphosphate kinase A
Low tissue specificity
Detected in all
NOC3L
ENSSSCG00000010484
ENSG00000173145
Nucleolar complex protein 3 homolog
Low tissue specificity
Detected in all
NUDT2
ENSSSCG00000010981
ENSG00000164978
Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]
Low tissue specificity
Detected in all
OIP5
ENSSSCG00000004750
ENSG00000104147
Opa interacting protein 5
Low tissue specificity
Detected in all
OSGEPL1
ENSSSCG00000016043
ENSG00000128694
O-sialoglycoprotein endopeptidase like 1
Low tissue specificity
Detected in all
PCDHA13
ENSSSCG00000028030
ENSG00000239389
Protocadherin alpha 13
Low tissue specificity
Detected in all
PEX12
ENSSSCG00000017713
ENSG00000108733
Peroxisomal biogenesis factor 12
Low tissue specificity
Detected in all
PLEKHD1
ENSSSCG00000002309
ENSG00000175985
Pleckstrin homology domain-containing family D member 1
Low tissue specificity
Detected in all
PNPT1
ENSSSCG00000031882
ENSG00000138035
Polyribonucleotide nucleotidyltransferase 1, mitochondrial
Low tissue specificity
Detected in all
POMT2
ENSSSCG00000002397
ENSG00000009830
Protein O-mannosyltransferase 2
Low tissue specificity
Detected in all
PRKRA
ENSSSCG00000038254
ENSG00000180228
Protein activator of interferon induced protein kinase EIF2AK2
Low tissue specificity
Detected in all
PTPN20
ENSSSCG00000010377
ENSG00000204179
Protein tyrosine phosphatase, non-receptor type 20
Low tissue specificity
Detected in all
RGS20
ENSSSCG00000006262
ENSG00000147509
Regulator of G protein signaling 20
Tissue enhanced
Detected in many
retina:
31.1
RINT1
ENSSSCG00000015430
ENSG00000135249
RAD50 interactor 1
Low tissue specificity
Detected in all
RITA1
ENSSSCG00000034479
ENSG00000139405
RBPJ interacting and tubulin associated 1
Low tissue specificity
Detected in all
SAAL1
ENSSSCG00000035393
ENSG00000166788
Serum amyloid A like 1
Tissue enriched
Detected in all
pineal gland:
170.2
SDHAF1
ENSSSCG00000024907
ENSG00000205138
Succinate dehydrogenase complex assembly factor 1
Low tissue specificity
Detected in all
SDHAF3
ENSSSCG00000023850
ENSG00000196636
Succinate dehydrogenase complex assembly factor 3
Low tissue specificity
Detected in all
SIKE1
ENSSSCG00000006751
ENSG00000052723
Suppressor of IKBKE 1
Low tissue specificity
Detected in all
SLC16A4
ENSSSCG00000006808
ENSG00000168679
Solute carrier family 16 member 4
Low tissue specificity
Detected in all
SLC25A33
ENSSSCG00000038006
ENSG00000171612
Solute carrier family 25 member 33
Low tissue specificity
Detected in all
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