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Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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477 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNTN
ENSSSCG00000011492
ENSG00000188817
Sentan, cilia apical structure protein
Tissue enhanced
Detected in some
endometrium:
8.7
fallopian tube:
39.7
lung:
10.7
upper respiratory system:
33.2
SPA17
ENSSSCG00000015197
ENSG00000064199
Sperm autoantigenic protein 17
Tissue enriched
Detected in many
testis:
61.1
SPACA9
ENSSSCG00000022250
ENSG00000165698
Sperm acrosome associated 9
Tissue enhanced
Detected in some
choroid plexus:
54.5
fallopian tube:
51.1
testis:
39.4
upper respiratory system:
47.7
SPAG1
ENSSSCG00000027587
ENSG00000104450
Sperm associated antigen 1
Tissue enhanced
Detected in all
choroid plexus:
34.9
testis:
48.1
SPAG17
ENSSSCG00000006726
ENSG00000155761
Sperm associated antigen 17
Tissue enhanced
Detected in some
fallopian tube:
22.2
lung:
12.7
testis:
42.1
upper respiratory system:
12.1
SPAG6
ENSSSCG00000011080
ENSG00000077327
Sperm-associated antigen 6
Group enriched
Detected in some
choroid plexus:
19.6
fallopian tube:
23.3
testis:
73.4
upper respiratory system:
18.7
SPAG8
ENSSSCG00000025842
ENSG00000137098
Sperm associated antigen 8
Low tissue specificity
Detected in all
SPATA17
ENSSSCG00000029778
ENSG00000162814
Spermatogenesis-associated protein 17
Tissue enhanced
Detected in many
epididymis:
24.3
fallopian tube:
33.2
testis:
30.9
SPATA18
ENSSSCG00000008834
ENSG00000163071
Mitochondria-eating protein
Group enriched
Detected in some
fallopian tube:
62.9
lung:
16.5
testis:
63.6
upper respiratory system:
30.6
SPATA22
ENSSSCG00000029709
ENSG00000141255
Spermatogenesis-associated protein 22
Tissue enriched
Detected in some
testis:
62.2
SPATA4
ENSSSCG00000015767
ENSG00000150628
Spermatogenesis-associated protein 4
Group enriched
Detected in some
liver:
24.5
testis:
57.5
SPATA6
ENSSSCG00000003881
ENSG00000132122
Spermatogenesis-associated protein 6
Tissue enriched
Detected in all
testis:
100.5
SPATA6L
ENSSSCG00000005221
ENSG00000106686
Spermatogenesis associated 6 like
Tissue enhanced
Detected in all
testis:
69.1
SPATS1
ENSSSCG00000039903
ENSG00000249481
Spermatogenesis associated serine rich 1
Tissue enhanced
Detected in some
choroid plexus:
18.6
fallopian tube:
17.4
upper respiratory system:
18.2
SPEF1
ENSSSCG00000007149
ENSG00000101222
Sperm flagellar protein 1
Tissue enhanced
Detected in many
fallopian tube:
29.9
upper respiratory system:
26.3
SPEF2
ENSSSCG00000016831
ENSG00000152582
Sperm flagellar protein 2
Tissue enhanced
Detected in many
choroid plexus:
35.6
fallopian tube:
41.3
testis:
33.7
STK33
ENSSSCG00000030206
ENSG00000130413
Serine/threonine kinase 33
Tissue enhanced
Detected in many
fallopian tube:
24.9
testis:
60.3
STMND1
ENSSSCG00000001067
ENSG00000230873
Stathmin domain containing 1
Tissue enhanced
Detected in some
choroid plexus:
17.5
endometrium:
15.0
fallopian tube:
42.4
lung:
18.8
upper respiratory system:
30.3
STOX1
ENSSSCG00000010245
ENSG00000165730
Storkhead box 1
Tissue enhanced
Detected in many
heart:
23.7
pituitary gland:
24.1
STPG1
ENSSSCG00000003541
ENSG00000001460
Sperm tail PG-rich repeat containing 1
Tissue enriched
Detected in many
testis:
73.2
TAS1R1
ENSSSCG00000003382
ENSG00000173662
Taste 1 receptor member 1
Tissue enhanced
Detected in many
choroid plexus:
12.1
fallopian tube:
12.4
TAS2R16
ENSSSCG00000037368
ENSG00000128519
Taste 2 receptor member 16
Tissue enhanced
Detected in some
epididymis:
11.4
fallopian tube:
13.2
upper respiratory system:
6.4
TCTE1
ENSSSCG00000001705
ENSG00000146221
T-complex-associated-testis-expressed 1
Tissue enhanced
Detected in some
fallopian tube:
34.8
testis:
69.1
upper respiratory system:
30.1
TCTEX1D4
ENSSSCG00000037270
ENSG00000188396
Tctex1 domain-containing protein 4
Group enriched
Detected in some
fallopian tube:
40.8
lung:
28.0
upper respiratory system:
66.8
TCTN3
ENSSSCG00000010496
ENSG00000119977
Tectonic family member 3
Low tissue specificity
Detected in all
TDRD5
ENSSSCG00000015527
ENSG00000162782
Tudor domain containing 5
Tissue enriched
Detected in some
testis:
31.9
TEKT2
ENSSSCG00000003633
ENSG00000092850
Tektin 2
Tissue enriched
Detected in some
testis:
73.7
TEKT3
ENSSSCG00000018028
ENSG00000125409
Tektin 3
Tissue enriched
Detected in some
testis:
68.4
TEX26
ENSSSCG00000009332
ENSG00000175664
Testis expressed 26
Tissue enhanced
Detected in many
fallopian tube:
24.6
mesothelial tissue:
20.7
testis:
45.8
TIGD4
ENSSSCG00000038186
ENSG00000169989
Tigger transposable element-derived protein 4
Tissue enhanced
Detected in many
retina:
26.9
TMEM107
ENSSSCG00000027528
ENSG00000179029
Transmembrane protein 107
Low tissue specificity
Detected in all
TNIP3
ENSSSCG00000009100
ENSG00000050730
TNFAIP3 interacting protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.4
testis:
23.3
upper respiratory system:
23.4
TOGARAM1
ENSSSCG00000027765
ENSG00000198718
TOG array regulator of axonemal microtubules 1
Low tissue specificity
Detected in all
TOGARAM2
ENSSSCG00000008534
ENSG00000189350
TOG array regulator of axonemal microtubules 2
Tissue enhanced
Detected in many
choroid plexus:
25.3
ductus deferens:
25.5
epididymis:
15.0
male glands:
19.8
TRAF3IP1
ENSSSCG00000025228
ENSG00000204104
TRAF3 interacting protein 1
Low tissue specificity
Detected in all
TSGA10
ENSSSCG00000008186
ENSG00000135951
Testis specific 10
Tissue enhanced
Detected in all
testis:
54.0
TSNAXIP1
ENSSSCG00000002767
ENSG00000102904
Translin associated factor X interacting protein 1
Tissue enhanced
Detected in many
fallopian tube:
12.7
testis:
37.3
upper respiratory system:
11.4
TTC12
ENSSSCG00000015047
ENSG00000149292
Tetratricopeptide repeat domain 12
Tissue enhanced
Detected in many
choroid plexus:
25.4
TTC21A
ENSSSCG00000011263
ENSG00000168026
Tetratricopeptide repeat domain 21A
Tissue enhanced
Detected in all
fallopian tube:
31.1
upper respiratory system:
24.7
TTC23L
ENSSSCG00000016825
ENSG00000205838
Tetratricopeptide repeat domain 23 like
Tissue enhanced
Detected in many
epididymis:
37.3
pineal gland:
20.4
testis:
33.2
upper respiratory system:
21.6
TTC25
ENSSSCG00000017415
ENSG00000204815
Tetratricopeptide repeat domain 25
Low tissue specificity
Detected in all
TTC26
ENSSSCG00000016511
ENSG00000105948
Tetratricopeptide repeat domain 26
Low tissue specificity
Detected in all
TTC29
ENSSSCG00000040272
ENSG00000137473
Tetratricopeptide repeat domain 29
Tissue enhanced
Detected in many
fallopian tube:
16.5
testis:
23.1
TTC6
ENSSSCG00000001939
ENSG00000139865
Tetratricopeptide repeat domain 6
Tissue enhanced
Detected in some
brain:
17.5
testis:
24.4
upper respiratory system:
7.5
TTLL10
ENSSSCG00000003336
ENSG00000162571
Tubulin tyrosine ligase like 10
Group enriched
Detected in some
fallopian tube:
45.3
lung:
46.8
testis:
35.8
upper respiratory system:
12.7
TTLL4
ENSSSCG00000016201
ENSG00000135912
Tubulin tyrosine ligase like 4
Tissue enhanced
Detected in all
testis:
50.0
TTLL6
ENSSSCG00000017542
ENSG00000170703
Tubulin tyrosine ligase like 6
Tissue enhanced
Detected in some
fallopian tube:
9.8
large intestine:
10.6
lung:
17.5
testis:
8.9
TTLL8
ENSSSCG00000000982
ENSG00000138892
Tubulin tyrosine ligase like 8
Group enriched
Detected in some
fallopian tube:
22.4
lung:
20.9
testis:
10.0
upper respiratory system:
16.6
TTLL9
ENSSSCG00000007236
ENSG00000131044
Tubulin tyrosine ligase like 9
Tissue enhanced
Detected in some
fallopian tube:
24.7
lung:
10.2
testis:
24.9
upper respiratory system:
14.6
TUBB4B
ENSSSCG00000037046
ENSG00000188229
Tubulin beta 4B class IVb
Tissue enhanced
Detected in all
testis:
66.8
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