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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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477 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IL4
ENSSSCG00000014282
ENSG00000113520
Interleukin-4
Tissue enhanced
Detected in many
fallopian tube:
8.5
testis:
6.5
IQCA1
ENSSSCG00000016321
ENSG00000132321
IQ motif containing with AAA domain 1
Tissue enhanced
Detected in some
fallopian tube:
38.0
lung:
15.6
upper respiratory system:
19.5
IQCD
ENSSSCG00000009877
ENSG00000166578
IQ motif containing D
Tissue enhanced
Detected in many
fallopian tube:
17.0
testis:
31.3
upper respiratory system:
27.7
IQCG
ENSSSCG00000011855
ENSG00000114473
IQ motif containing G
Group enriched
Detected in many
fallopian tube:
26.5
lung:
10.1
testis:
38.2
upper respiratory system:
15.2
IQCH
ENSSSCG00000034963
ENSG00000103599
IQ motif containing H
Tissue enhanced
Detected in many
fallopian tube:
13.0
testis:
34.6
IQUB
ENSSSCG00000016608
ENSG00000164675
IQ motif and ubiquitin domain containing
Tissue enhanced
Detected in many
fallopian tube:
42.3
testis:
27.4
IRS4
ENSSSCG00000031027
ENSG00000133124
Insulin receptor substrate 4
Group enriched
Detected in some
brain:
18.6
choroid plexus:
55.2
pituitary gland:
62.6
KATNAL2
ENSSSCG00000022643
ENSG00000167216
Katanin catalytic subunit A1 like 2
Tissue enhanced
Detected in many
choroid plexus:
14.0
fallopian tube:
18.2
testis:
19.7
KIAA1549
ENSSSCG00000016513
ENSG00000122778
KIAA1549
Tissue enhanced
Detected in many
cartilage:
35.0
KIAA2012
ENSSSCG00000016110
ENSG00000182329
KIAA2012
Tissue enhanced
Detected in many
choroid plexus:
15.2
fallopian tube:
20.5
lung:
21.6
upper respiratory system:
38.7
KIF17
ENSSSCG00000003508
ENSG00000117245
Kinesin family member 17
Tissue enriched
Detected in some
testis:
88.9
KIF19
ENSSSCG00000021724
ENSG00000196169
Kinesin family member 19
Tissue enhanced
Detected in some
choroid plexus:
18.2
vagus nerve:
68.4
KIF27
ENSSSCG00000021571
ENSG00000165115
Kinesin family member 27
Tissue enhanced
Detected in many
choroid plexus:
22.2
fallopian tube:
40.7
testis:
40.2
KIF9
ENSSSCG00000040510
ENSG00000088727
Kinesin family member 9
Tissue enhanced
Detected in all
testis:
30.3
KNCN
ENSSSCG00000034300
ENSG00000162456
Kinocilin
Tissue enhanced
Detected in many
choroid plexus:
9.4
epididymis:
6.6
LCA5L
ENSSSCG00000028122
ENSG00000157578
LCA5L, lebercilin like
Tissue enriched
Detected in many
testis:
49.8
LDLRAD1
ENSSSCG00000027641
ENSG00000203985
Low density lipoprotein receptor class A domain containing 1
Group enriched
Detected in some
fallopian tube:
45.2
lung:
17.7
upper respiratory system:
66.3
LEXM
ENSSSCG00000027362
ENSG00000162398
Lymphocyte expansion molecule
Tissue enhanced
Detected in some
fallopian tube:
7.6
testis:
19.5
LKAAEAR1
ENSSSCG00000033548
ENSG00000171695
LKAAEAR motif containing 1
Tissue enriched
Detected in some
testis:
38.8
LMLN
ENSSSCG00000011857
ENSG00000185621
Leishmanolysin like peptidase
Low tissue specificity
Detected in many
LMNTD1
ENSSSCG00000027144
ENSG00000152936
Lamin tail domain containing 1
Tissue enhanced
Detected in all
epididymis:
47.9
LPAR3
ENSSSCG00000003756
ENSG00000171517
Lysophosphatidic acid receptor 3
Tissue enhanced
Detected in many
fallopian tube:
14.0
lung:
11.7
upper respiratory system:
13.2
LRGUK
ENSSSCG00000016542
ENSG00000155530
Leucine rich repeats and guanylate kinase domain containing
Tissue enhanced
Detected in many
brain:
16.3
fallopian tube:
35.2
upper respiratory system:
19.4
LRRC10B
ENSSSCG00000013088
ENSG00000204950
Leucine rich repeat containing 10B
Tissue enhanced
Detected in many
brain:
23.1
fallopian tube:
32.9
upper respiratory system:
32.2
LRRC18
ENSSSCG00000010384
ENSG00000165383
Leucine rich repeat containing 18
Tissue enhanced
Detected in some
choroid plexus:
19.8
testis:
86.6
upper respiratory system:
24.4
LRRC23
ENSSSCG00000000679
ENSG00000010626
Leucine rich repeat containing 23
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
15.1
testis:
26.6
upper respiratory system:
24.0
LRRC34
ENSSSCG00000024714
ENSG00000171757
Leucine rich repeat containing 34
Tissue enhanced
Detected in many
choroid plexus:
16.3
fallopian tube:
19.0
testis:
43.4
LRRC36
ENSSSCG00000002779
ENSG00000159708
Leucine rich repeat containing 36
Tissue enhanced
Detected in many
fallopian tube:
15.7
testis:
42.3
upper respiratory system:
15.3
LRRC46
ENSSSCG00000017520
ENSG00000141294
Leucine rich repeat containing 46
Tissue enhanced
Detected in some
fallopian tube:
26.9
testis:
53.1
upper respiratory system:
32.8
LRRC51
ENSSSCG00000014803
ENSG00000284922
Leucine-rich repeat-containing protein 51
Tissue enriched
Detected in many
testis:
72.5
LRRC56
ENSSSCG00000027045
ENSG00000161328
Leucine rich repeat containing 56
Tissue enhanced
Detected in many
fallopian tube:
17.4
lens:
25.9
testis:
44.3
upper respiratory system:
22.1
LRRC6
ENSSSCG00000005952
ENSG00000129295
Protein tilB homolog
Tissue enhanced
Detected in all
fallopian tube:
22.4
testis:
35.1
LRRC71
ENSSSCG00000006462
ENSG00000160838
Leucine rich repeat containing 71
Tissue enhanced
Detected in many
epididymis:
27.3
fallopian tube:
35.6
lung:
17.2
upper respiratory system:
17.3
LRRIQ1
ENSSSCG00000000934
ENSG00000133640
Leucine rich repeats and IQ motif containing 1
Tissue enhanced
Detected in many
choroid plexus:
24.3
fallopian tube:
23.6
testis:
25.2
MAATS1
ENSSSCG00000011892
ENSG00000183833
MYCBP associated and testis expressed 1
Tissue enhanced
Detected in all
choroid plexus:
20.4
fallopian tube:
28.9
MAK
ENSSSCG00000001042
ENSG00000111837
Male germ cell associated kinase
Tissue enhanced
Detected in many
retina:
90.6
testis:
31.4
MAP3K19
ENSSSCG00000015696
ENSG00000176601
Mitogen-activated protein kinase kinase kinase 19
Tissue enhanced
Detected in some
brain:
13.9
choroid plexus:
18.8
fallopian tube:
29.7
upper respiratory system:
14.3
MAPK15
ENSSSCG00000035933
ENSG00000181085
Mitogen-activated protein kinase 15
Tissue enhanced
Detected in many
fallopian tube:
59.5
lung:
50.4
upper respiratory system:
25.1
MARS2
ENSSSCG00000034494
ENSG00000247626
Methionyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
MCIDAS
ENSSSCG00000036183
ENSG00000234602
Multicilin
Group enriched
Detected in some
lung:
12.4
upper respiratory system:
25.6
MEIG1
ENSSSCG00000034119
ENSG00000197889
Meiosis/spermiogenesis associated 1
Tissue enriched
Detected in many
testis:
49.3
MINDY4
ENSSSCG00000016674
ENSG00000106125
MINDY lysine 48 deubiquitinase 4
Low tissue specificity
Detected in all
MNS1
ENSSSCG00000004601
ENSG00000138587
Meiosis specific nuclear structural 1
Tissue enhanced
Detected in many
choroid plexus:
18.3
fallopian tube:
20.6
testis:
20.3
MOK
ENSSSCG00000002531
ENSG00000080823
MOK protein kinase
Tissue enhanced
Detected in many
fallopian tube:
25.5
testis:
36.8
MORN1
ENSSSCG00000028706
ENSG00000116151
MORN repeat containing 1
Tissue enhanced
Detected in many
testis:
21.0
MORN3
ENSSSCG00000009809
ENSG00000139714
MORN repeat-containing protein 3
Tissue enhanced
Detected in many
fallopian tube:
12.9
testis:
20.8
upper respiratory system:
24.9
MRM1
ENSSSCG00000017691
ENSG00000278619
RRNA methyltransferase 1, mitochondrial
Low tissue specificity
Detected in many
MSTN
ENSSSCG00000016047
ENSG00000138379
Growth/differentiation factor 8
Group enriched
Detected in some
breast:
7.0
choroid plexus:
20.9
retina:
17.5
skeletal muscle:
9.1
MYCBPAP
ENSSSCG00000017563
ENSG00000136449
MYCBP associated protein
Tissue enriched
Detected in many
testis:
56.2
na
ENSSSCG00000000028
Tissue enhanced
Detected in many
lens:
18.8
testis:
45.5
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