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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM214B
ENSSSCG00000005301
ENSG00000005238
Family with sequence similarity 214 member B
Low tissue specificity
Detected in all
FAM8A1
ENSSSCG00000001070
ENSG00000137414
Family with sequence similarity 8 member A1
Low tissue specificity
Detected in all
FAM98A
ENSSSCG00000008508
ENSG00000119812
Family with sequence similarity 98 member A
Low tissue specificity
Detected in all
FAM98C
ENSSSCG00000002959
ENSG00000130244
Family with sequence similarity 98 member C
Low tissue specificity
Detected in all
FBXO7
ENSSSCG00000000156
ENSG00000100225
F-box only protein 7
Low tissue specificity
Detected in all
FBXW5
ENSSSCG00000005839
ENSG00000159069
F-box and WD repeat domain containing 5
Low tissue specificity
Detected in all
FECH
ENSSSCG00000004541
ENSG00000066926
Ferrochelatase, mitochondrial
Tissue enhanced
Detected in all
choroid plexus:
75.1
FH
ENSSSCG00000028178
ENSG00000091483
Fumarate hydratase, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
54.3
FITM2
ENSSSCG00000037912
ENSG00000197296
Fat storage-inducing transmembrane protein 2
Tissue enhanced
Detected in all
heart:
48.4
FMC1
ENSSSCG00000038700
ENSG00000164898
Formation of mitochondrial complex V assembly factor 1 homolog
Low tissue specificity
Detected in all
FUNDC2
ENSSSCG00000012817
FUN14 domain-containing protein 2
Low tissue specificity
Detected in all
GABARAP
ENSSSCG00000017936
ENSG00000170296
Gamma-aminobutyric acid receptor-associated protein
Low tissue specificity
Detected in all
GALM
ENSSSCG00000008486
ENSG00000143891
Aldose 1-epimerase
Low tissue specificity
Detected in all
GBA
ENSSSCG00000006522
ENSG00000177628
Glucosylceramidase precursor
Low tissue specificity
Detected in all
GBE1
ENSSSCG00000012000
ENSG00000114480
1,4-alpha-glucan branching enzyme 1
Tissue enhanced
Detected in all
cartilage:
61.9
GET4
ENSSSCG00000040103
ENSG00000239857
Golgi to ER traffic protein 4
Low tissue specificity
Detected in all
GFM1
ENSSSCG00000025651
ENSG00000168827
G elongation factor mitochondrial 1
Low tissue specificity
Detected in all
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
GGH
ENSSSCG00000037637
ENSG00000137563
Gamma-glutamyl hydrolase
Tissue enhanced
Detected in all
liver:
68.0
GLRX5
ENSSSCG00000002496
ENSG00000182512
Glutaredoxin 5
Low tissue specificity
Detected in all
GMPR
ENSSSCG00000001064
ENSG00000137198
Guanosine monophosphate reductase
Tissue enhanced
Detected in all
heart:
44.1
skeletal muscle:
71.7
GMPR2
ENSSSCG00000026947
ENSG00000100938
Guanosine monophosphate reductase 2
Low tissue specificity
Detected in all
GNB2
ENSSSCG00000007669
ENSG00000172354
G protein subunit beta 2
Low tissue specificity
Detected in all
GNPAT
ENSSSCG00000010175
ENSG00000116906
Dihydroxyacetone phosphate acyltransferase
Low tissue specificity
Detected in all
GORASP1
ENSSSCG00000034916
ENSG00000114745
Golgi reassembly stacking protein 1
Low tissue specificity
Detected in all
GOT2
ENSSSCG00000032985
ENSG00000125166
Aspartate aminotransferase, mitochondrial
Low tissue specificity
Detected in all
GPD1
ENSSSCG00000000214
ENSG00000167588
Glycerol-3-phosphate dehydrogenase
Tissue enhanced
Detected in all
adipose tissue:
55.9
skeletal muscle:
142.5
GPI
ENSSSCG00000002873
ENSG00000105220
Glucose-6-phosphate isomerase
Tissue enhanced
Detected in all
lens:
152.2
skeletal muscle:
130.5
GPX4
ENSSSCG00000024052
ENSG00000167468
Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
Tissue enhanced
Detected in all
lens:
91.2
testis:
112.1
GRHPR
ENSSSCG00000005349
ENSG00000137106
Glyoxylate and hydroxypyruvate reductase
Tissue enhanced
Detected in all
liver:
60.7
HACD2
ENSSSCG00000034786
ENSG00000206527
3-hydroxyacyl-CoA dehydratase 2
Tissue enhanced
Detected in all
adipose tissue:
52.3
HACL1
ENSSSCG00000011192
ENSG00000131373
2-hydroxyacyl-CoA lyase 1
Low tissue specificity
Detected in all
HADHB
ENSSSCG00000008569
ENSG00000138029
Tissue enhanced
Detected in all
heart:
90.4
HAGH
ENSSSCG00000008012
ENSG00000063854
Hydroxyacylglutathione hydrolase
Tissue enhanced
Detected in all
testis:
92.8
HARS2
ENSSSCG00000014376
ENSG00000112855
Histidyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
HEBP1
ENSSSCG00000040275
ENSG00000013583
Heme-binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.5
male glands:
38.7
HECTD1
ENSSSCG00000001971
ENSG00000092148
HECT domain E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
HERPUD2
ENSSSCG00000027389
ENSG00000122557
HERPUD family member 2
Low tissue specificity
Detected in all
HIBADH
ENSSSCG00000016695
ENSG00000106049
3-hydroxyisobutyrate dehydrogenase
Low tissue specificity
Detected in all
HIBCH
ENSSSCG00000016049
ENSG00000198130
3-hydroxyisobutyryl-CoA hydrolase
Low tissue specificity
Detected in all
HIGD2A
ENSSSCG00000029179
ENSG00000146066,ENSG00000175202
HIG1 domain family member 2A, mitochondrial
Low tissue specificity
Detected in all
HIKESHI
ENSSSCG00000021210
ENSG00000149196
Hikeshi, heat shock protein nuclear import factor
Tissue enhanced
Detected in all
lens:
60.3
HILPDA
ENSSSCG00000031109
ENSG00000135245
Hypoxia-inducible lipid droplet-associated protein
Low tissue specificity
Detected in all
HIPK1
ENSSSCG00000006760
ENSG00000163349
Homeodomain interacting protein kinase 1
Low tissue specificity
Detected in all
HMGCL
ENSSSCG00000026025
ENSG00000117305
3-hydroxymethyl-3-methylglutaryl-CoA lyase
Tissue enhanced
Detected in all
liver:
40.5
HMOX2
ENSSSCG00000007942
ENSG00000103415
Heme oxygenase 2
Low tissue specificity
Detected in all
HRAS
ENSSSCG00000031513
ENSG00000174775
HRas proto-oncogene, GTPase
Tissue enhanced
Detected in all
lens:
85.8
HSCB
ENSSSCG00000034860
ENSG00000100209
HscB mitochondrial iron-sulfur cluster cochaperone
Low tissue specificity
Detected in all
HSD17B10
ENSSSCG00000012327
ENSG00000072506
Hydroxysteroid 17-beta dehydrogenase 10
Tissue enhanced
Detected in all
liver:
114.6
HSD17B4
ENSSSCG00000028431
ENSG00000133835
Peroxisomal multifunctional enzyme type 2
Tissue enhanced
Detected in all
liver:
83.5
testis:
71.4
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