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Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CALCOCO1
ENSSSCG00000028481
ENSG00000012822
Calcium binding and coiled-coil domain 1
Low tissue specificity
Detected in all
CAMK2D
ENSSSCG00000009123
ENSG00000145349
Calcium/calmodulin-dependent protein kinase type II subunit delta
Tissue enhanced
Detected in all
heart:
155.3
CAND2
ENSSSCG00000011582
ENSG00000144712
Cullin associated and neddylation dissociated 2 (putative)
Tissue enhanced
Detected in many
skeletal muscle:
40.6
CAVIN4
ENSSSCG00000037954
ENSG00000170681
Caveolae associated protein 4
Tissue enriched
Detected in some
skeletal muscle:
37.9
CCDC9B
ENSSSCG00000023975
ENSG00000188549
Coiled-coil domain containing 9B
Low tissue specificity
Detected in all
CD81
ENSSSCG00000039243
ENSG00000110651
CD81 antigen
Low tissue specificity
Detected in all
CDC42BPA
ENSSSCG00000010862
ENSG00000143776
CDC42 binding protein kinase alpha
Low tissue specificity
Detected in all
CDC42EP2
ENSSSCG00000012996
ENSG00000149798
CDC42 effector protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
68.1
CDH13
ENSSSCG00000002684
ENSG00000140945
Cadherin-13 precursor
Tissue enhanced
Detected in many
cartilage:
105.0
heart:
54.6
synovial tissue:
58.9
CDR2L
ENSSSCG00000017218
ENSG00000109089
Cerebellar degeneration related protein 2 like
Low tissue specificity
Detected in all
CEMIP
ENSSSCG00000038929
ENSG00000103888
Cell migration inducing hyaluronan binding protein
Tissue enhanced
Detected in many
brain:
29.7
ovary:
44.6
CFL2
ENSSSCG00000001959
ENSG00000165410
Cofilin-2
Tissue enhanced
Detected in all
skeletal muscle:
60.3
smooth muscle:
74.5
CHMP4A
ENSSSCG00000033432
ENSG00000254505
Charged multivesicular body protein 4A
Low tissue specificity
Detected in many
CHPT1
ENSSSCG00000000864
ENSG00000111666
Choline phosphotransferase 1
Tissue enhanced
Detected in all
adipose tissue:
46.0
liver:
72.5
CHRDL1
ENSSSCG00000012576
ENSG00000101938
Chordin like 1
Tissue enhanced
Detected in many
lens:
58.7
CHRM2
ENSSSCG00000032532
ENSG00000181072
Muscarinic acetylcholine receptor M2
Tissue enhanced
Detected in many
gallbladder:
38.1
heart:
22.9
smooth muscle:
24.7
CHRNA2
ENSSSCG00000009665
ENSG00000120903
Cholinergic receptor nicotinic alpha 2 subunit
Tissue enhanced
Detected in many
brain:
21.7
liver:
13.8
CHURC1-FNTB
ENSSSCG00000002281
ENSG00000125954
Protein farnesyltransferase subunit beta
Low tissue specificity
Detected in all
CLASP1
ENSSSCG00000039157
ENSG00000074054
Cytoplasmic linker associated protein 1
Low tissue specificity
Detected in all
CLDN9
ENSSSCG00000021536
ENSG00000213937
Claudin-9
Tissue enhanced
Detected in many
pituitary gland:
31.2
CLIC4
ENSSSCG00000038994
ENSG00000169504
Chloride intracellular channel 4
Low tissue specificity
Detected in all
CLPTM1
ENSSSCG00000003085
ENSG00000104853
CLPTM1, transmembrane protein
Low tissue specificity
Detected in all
CNMD
ENSSSCG00000009442
ENSG00000136110
Chondromodulin
Tissue enhanced
Detected in some
cartilage:
23.0
choroid plexus:
102.2
pineal gland:
28.0
CNN3
ENSSSCG00000006887
ENSG00000117519
Calponin 3
Low tissue specificity
Detected in all
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
COL11A2
ENSSSCG00000001473
ENSG00000204248
Collagen type XI alpha 2 chain
Tissue enriched
Detected in some
cartilage:
294.3
COL26A1
ENSSSCG00000007678
ENSG00000160963
Collagen type XXVI alpha 1 chain
Tissue enhanced
Detected in many
adipose tissue:
31.0
lymphoid tissue:
16.8
ovary:
13.3
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COQ10A
ENSSSCG00000025190
ENSG00000135469
Coenzyme Q10A
Tissue enhanced
Detected in many
heart:
21.6
skeletal muscle:
52.3
CP
ENSSSCG00000011700
ENSG00000047457
Ceruloplasmin precursor
Tissue enriched
Detected in many
liver:
192.8
CPEB2
ENSSSCG00000038410
ENSG00000137449
Cytoplasmic polyadenylation element-binding protein 2
Tissue enhanced
Detected in all
testis:
57.4
CPEB3
ENSSSCG00000010468
ENSG00000107864
Cytoplasmic polyadenylation element binding protein 3
Tissue enhanced
Detected in all
salivary gland:
51.1
CPEB4
ENSSSCG00000016981
ENSG00000113742
Cytoplasmic polyadenylation element binding protein 4
Tissue enhanced
Detected in all
kidney:
103.8
lens:
104.0
CRY2
ENSSSCG00000013270
ENSG00000121671
Cryptochrome circadian regulator 2
Low tissue specificity
Detected in all
CRYAB
ENSSSCG00000036724
ENSG00000109846
Alpha-crystallin B chain
Tissue enriched
Detected in many
lens:
2223.0
CTXN3
ENSSSCG00000036570
ENSG00000205279
Cortexin 3
Tissue enhanced
Detected in many
brain:
23.1
dura mater:
22.3
pineal gland:
33.0
CUEDC1
ENSSSCG00000017624
ENSG00000180891
CUE domain containing 1
Low tissue specificity
Detected in all
CYP2J34
ENSSSCG00000003825
ENSG00000134716
Cytochrome P450, family 2, subfamily J, polypeptide 34
Tissue enhanced
Detected in all
brain:
40.9
lens:
53.1
male glands:
34.2
CYP51A1
ENSSSCG00000015311
ENSG00000001630
Lanosterol 14-alpha demethylase
Low tissue specificity
Detected in all
CYP7B1
ENSSSCG00000022092
ENSG00000172817
Cytochrome P450 family 7 subfamily B member 1
Tissue enhanced
Detected in all
liver:
68.1
CYS1
ENSSSCG00000040267
ENSG00000205795
Cystin 1
Low tissue specificity
Detected in all
DAAM1
ENSSSCG00000005078
ENSG00000100592
Dishevelled associated activator of morphogenesis 1
Low tissue specificity
Detected in all
DCHS1
ENSSSCG00000029189
ENSG00000166341
Dachsous cadherin-related 1
Tissue enhanced
Detected in many
cartilage:
47.4
DDIT4L
ENSSSCG00000025240
ENSG00000145358
DNA damage inducible transcript 4 like
Tissue enhanced
Detected in many
choroid plexus:
36.4
heart:
41.4
mesothelial tissue:
47.4
skeletal muscle:
43.1
DDO
ENSSSCG00000004401
ENSG00000203797
D-aspartate oxidase
Tissue enhanced
Detected in many
heart:
22.1
kidney:
22.5
male glands:
19.9
DDRGK1
ENSSSCG00000007160
ENSG00000198171
DDRGK domain-containing protein 1
Low tissue specificity
Detected in all
DHCR24
ENSSSCG00000027525
ENSG00000116133
Delta(24)-sterol reductase
Tissue enhanced
Detected in all
liver:
83.6
ovary:
72.7
DIP2B
ENSSSCG00000029196
ENSG00000066084
Disco interacting protein 2 homolog B
Low tissue specificity
Detected in all
DIP2C
ENSSSCG00000011163
ENSG00000151240
Disco interacting protein 2 homolog C
Low tissue specificity
Detected in all
DISC1
ENSSSCG00000010170
ENSG00000162946
Disrupted in schizophrenia 1
Tissue enhanced
Detected in all
lens:
47.8
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