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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BRINP1
ENSSSCG00000005504
ENSG00000078725
BMP/retinoic acid-inducible neural-specific protein 1 precursor
Tissue enriched
Detected in many
brain:
39.1
BRINP2
ENSSSCG00000015515
ENSG00000198797
BMP/retinoic acid inducible neural specific 2
Group enriched
Detected in some
brain:
23.6
pineal gland:
6.3
BRINP3
ENSSSCG00000010809
ENSG00000162670
BMP/retinoic acid inducible neural specific 3
Tissue enhanced
Detected in some
brain:
26.7
ductus deferens:
10.9
BRSK1
ENSSSCG00000032656
ENSG00000160469
BR serine/threonine kinase 1
Tissue enhanced
Detected in many
brain:
34.5
BRSK2
ENSSSCG00000037337
ENSG00000174672
BR serine/threonine kinase 2
Tissue enhanced
Detected in some
brain:
26.5
retina:
17.2
BSN
ENSSSCG00000011384
ENSG00000164061
Bassoon presynaptic cytomatrix protein
Tissue enriched
Detected in many
brain:
35.8
BTBD17
ENSSSCG00000026789
ENSG00000204347
BTB domain containing 17
Tissue enriched
Detected in some
brain:
24.9
BTBD3
ENSSSCG00000020853
ENSG00000132640
BTB domain containing 3
Tissue enhanced
Detected in all
brain:
64.1
BTBD8
ENSSSCG00000035196
ENSG00000189195
BTB domain containing 8
Tissue enhanced
Detected in all
brain:
26.7
pineal gland:
66.6
C14orf132
ENSSSCG00000033807
ENSG00000227051
Chromosome 14 open reading frame 132
Tissue enhanced
Detected in many
brain:
36.9
C1QL2
ENSSSCG00000015717
ENSG00000144119
Complement C1q like 2
Group enriched
Detected in some
brain:
12.9
pituitary gland:
3.2
retina:
10.1
C2CD4C
ENSSSCG00000037177
ENSG00000183186
C2 calcium dependent domain containing 4C
Tissue enriched
Detected in some
brain:
11.4
C2orf72
ENSSSCG00000016270
ENSG00000204128
Chromosome 2 open reading frame 72
Tissue enhanced
Detected in many
liver:
40.7
C3orf14
ENSSSCG00000011486
ENSG00000114405
Chromosome 3 open reading frame 14
Tissue enhanced
Detected in many
brain:
13.4
pineal gland:
18.9
pituitary gland:
10.1
retina:
9.6
C5orf30
ENSSSCG00000038779
ENSG00000181751
Chromosome 5 open reading frame 30
Tissue enhanced
Detected in all
adrenal gland:
25.4
brain:
28.3
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CACNA1A
ENSSSCG00000013754
ENSG00000141837
Calcium voltage-gated channel subunit alpha1 A
Tissue enhanced
Detected in many
brain:
52.1
pineal gland:
19.4
CACNA1D
ENSSSCG00000011455
ENSG00000157388
Calcium voltage-gated channel subunit alpha1 D
Tissue enhanced
Detected in many
adrenal gland:
52.2
male glands:
30.6
CACNA1G
ENSSSCG00000017562
ENSG00000006283
Calcium voltage-gated channel subunit alpha1 G
Tissue enhanced
Detected in many
brain:
25.6
CACNA1I
ENSSSCG00000000082
ENSG00000100346
Calcium voltage-gated channel subunit alpha1 I
Tissue enhanced
Detected in some
brain:
20.9
kidney:
16.8
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CACNB4
ENSSSCG00000029073
ENSG00000182389
Voltage-dependent L-type calcium channel subunit beta-4
Tissue enriched
Detected in many
brain:
64.8
CACNG2
ENSSSCG00000033551
ENSG00000166862
Calcium voltage-gated channel auxiliary subunit gamma 2
Tissue enhanced
Detected in some
brain:
15.4
retina:
5.4
CACNG4
ENSSSCG00000037202
ENSG00000075461
Calcium voltage-gated channel auxiliary subunit gamma 4
Tissue enriched
Detected in some
brain:
62.5
CACNG5
ENSSSCG00000036461
ENSG00000075429
Calcium voltage-gated channel auxiliary subunit gamma 5
Tissue enhanced
Detected in some
adipose tissue:
8.6
brain:
37.1
retina:
14.7
CACNG7
ENSSSCG00000025532
ENSG00000105605
Calcium voltage-gated channel auxiliary subunit gamma 7
Tissue enhanced
Detected in some
brain:
49.8
pineal gland:
14.7
retina:
15.6
CADPS
ENSSSCG00000011489
ENSG00000163618
Calcium dependent secretion activator
Tissue enhanced
Detected in some
brain:
34.3
cornea:
14.2
pituitary gland:
14.2
retina:
54.8
CALB2
ENSSSCG00000002730
ENSG00000172137
Calbindin 2
Group enriched
Detected in some
brain:
95.3
retina:
43.5
CALN1
ENSSSCG00000007730
ENSG00000183166
Calneuron 1
Tissue enriched
Detected in some
adrenal gland:
82.4
CALY
ENSSSCG00000034701
ENSG00000130643
Calcyon neuron specific vesicular protein
Group enriched
Detected in all
brain:
56.8
pituitary gland:
26.8
CAMK2N1
ENSSSCG00000024009
ENSG00000162545
Calcium/calmodulin dependent protein kinase II inhibitor 1
Tissue enriched
Detected in many
brain:
117.1
CAMK2N2
ENSSSCG00000029888
ENSG00000163888
Calcium/calmodulin dependent protein kinase II inhibitor 2
Group enriched
Detected in some
adrenal gland:
8.1
brain:
27.3
CAMTA1
ENSSSCG00000036772
ENSG00000171735
Calmodulin binding transcription activator 1
Tissue enhanced
Detected in many
brain:
25.4
pineal gland:
13.6
CARMIL3
ENSSSCG00000002012
ENSG00000186648
Capping protein regulator and myosin 1 linker 3
Tissue enhanced
Detected in many
brain:
10.1
testis:
14.7
CARTPT
ENSSSCG00000016972
ENSG00000164326
Cocaine- and amphetamine-regulated transcript protein precursor
Group enriched
Detected in some
brain:
68.0
retina:
21.4
CBLN1
ENSSSCG00000040652
ENSG00000102924
Cerebellin-1 precursor
Tissue enriched
Detected in some
brain:
84.6
CBLN4
ENSSSCG00000007490
ENSG00000054803
Cerebellin-4 precursor
Tissue enriched
Detected in single
brain:
13.6
CCDC136
ENSSSCG00000016579
ENSG00000128596
Coiled-coil domain containing 136
Tissue enriched
Detected in all
testis:
85.8
CCDC184
ENSSSCG00000039340
ENSG00000177875
Coiled-coil domain containing 184
Tissue enhanced
Detected in some
brain:
18.8
pituitary gland:
13.3
retina:
5.3
testis:
6.0
CCK
ENSSSCG00000011277
ENSG00000187094
Cholecystokinin precursor
Group enriched
Detected in some
brain:
94.4
heart:
73.4
CCSAP
ENSSSCG00000023776
ENSG00000154429
Centriole, cilia and spindle associated protein
Tissue enhanced
Detected in many
brain:
31.4
CD200
ENSSSCG00000027820
ENSG00000091972
CD200 molecule
Tissue enhanced
Detected in all
vagus nerve:
38.6
CDH10
ENSSSCG00000016802
ENSG00000040731
Cadherin 10
Tissue enhanced
Detected in some
brain:
21.6
pituitary gland:
5.0
retina:
6.3
CDH12
ENSSSCG00000016799
ENSG00000154162
Cadherin 12
Tissue enhanced
Detected in some
brain:
18.4
retina:
9.4
smooth muscle:
9.5
CDH18
ENSSSCG00000026842
ENSG00000145526
Cadherin 18
Group enriched
Detected in some
brain:
25.7
pineal gland:
55.4
CDH22
ENSSSCG00000007439
ENSG00000149654
Cadherin 22
Tissue enriched
Detected in some
brain:
17.8
CDH4
ENSSSCG00000025784
ENSG00000179242
Cadherin 4
Tissue enhanced
Detected in many
brain:
20.8
kidney:
9.4
pituitary gland:
9.5
CDH7
ENSSSCG00000004886
ENSG00000081138
Cadherin 7
Group enriched
Detected in some
brain:
37.0
retina:
24.3
CDH8
ENSSSCG00000040687
ENSG00000150394
Cadherin 8
Tissue enhanced
Detected in some
brain:
27.5
epididymis:
29.0
pineal gland:
20.2
CDHR1
ENSSSCG00000010348
ENSG00000148600
Cadherin related family member 1
Group enriched
Detected in many
brain:
22.3
pineal gland:
24.1
retina:
71.5
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