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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM35A
ENSSSCG00000012490
ENSG00000126950
Transmembrane protein 35A
Tissue enhanced
Detected in many
brain:
17.4
pineal gland:
20.4
pituitary gland:
11.3
TMEM59L
ENSSSCG00000013911
ENSG00000105696
Transmembrane protein 59-like precursor
Group enriched
Detected in many
brain:
64.7
pineal gland:
64.0
pituitary gland:
19.5
retina:
21.7
TMEM63C
ENSSSCG00000002398
ENSG00000165548
Transmembrane protein 63C
Tissue enhanced
Detected in many
brain:
33.6
TNIK
ENSSSCG00000028905
ENSG00000154310
TRAF2 and NCK interacting kinase
Low tissue specificity
Detected in all
TNR
ENSSSCG00000015508
ENSG00000116147
Tenascin R
Tissue enhanced
Detected in some
brain:
27.1
pituitary gland:
8.3
retina:
6.4
TPPP
ENSSSCG00000032698
ENSG00000171368
Tubulin polymerization-promoting protein
Tissue enhanced
Detected in many
brain:
57.4
skin:
41.7
TRAM1L1
ENSSSCG00000036158
ENSG00000174599
Translocation associated membrane protein 1 like 1
Tissue enhanced
Detected in some
brain:
6.1
lens:
4.0
pituitary gland:
4.1
retina:
2.2
TRH
ENSSSCG00000011596
ENSG00000170893
Thyrotropin-releasing hormone precursor
Tissue enhanced
Detected in some
brain:
30.5
gallbladder:
9.6
upper respiratory system:
7.0
TRHDE
ENSSSCG00000000515
ENSG00000072657
Thyrotropin releasing hormone degrading enzyme
Tissue enhanced
Detected in many
brain:
21.5
liver:
14.8
thyroid gland:
30.7
TRIM44
ENSSSCG00000013295
ENSG00000166326
Tripartite motif containing 44
Low tissue specificity
Detected in all
TRIM67
ENSSSCG00000010177
ENSG00000119283
Tripartite motif containing 67
Group enriched
Detected in some
brain:
12.4
pineal gland:
4.1
pituitary gland:
5.9
retina:
11.0
TRIM9
ENSSSCG00000005025
ENSG00000100505
Tripartite motif containing 9
Group enriched
Detected in some
brain:
35.4
cervix:
19.4
TRNP1
ENSSSCG00000027325
ENSG00000253368
TMF1-regulated nuclear protein 1
Tissue enhanced
Detected in many
brain:
20.8
retina:
17.6
salivary gland:
16.9
TRPC5
ENSSSCG00000012587
ENSG00000072315
Short transient receptor potential channel 5
Tissue enriched
Detected in some
brain:
16.3
TSPAN17
ENSSSCG00000014051
ENSG00000048140
Tetraspanin 17
Tissue enhanced
Detected in all
retina:
44.9
TTBK1
ENSSSCG00000001664
ENSG00000146216
Tau tubulin kinase 1
Tissue enriched
Detected in some
brain:
18.7
TTC39B
ENSSSCG00000005186
ENSG00000155158
Tetratricopeptide repeat domain 39B
Low tissue specificity
Detected in many
TTLL11
ENSSSCG00000036218
ENSG00000175764
Tubulin tyrosine ligase like 11
Tissue enhanced
Detected in many
brain:
15.2
skeletal muscle:
27.1
testis:
14.0
TTPAL
ENSSSCG00000036684
ENSG00000124120
Alpha tocopherol transfer protein like
Low tissue specificity
Detected in all
TUBB3
ENSSSCG00000002639
ENSG00000258947
Tubulin beta 3 class III
Tissue enriched
Detected in some
brain:
69.0
TULP4
ENSSSCG00000031776
ENSG00000130338
Tubby like protein 4
Low tissue specificity
Detected in all
UBFD1
ENSSSCG00000040265
ENSG00000103353
Ubiquitin family domain containing 1
Low tissue specificity
Detected in all
UNC13A
ENSSSCG00000013880
ENSG00000130477
Unc-13 homolog A
Tissue enhanced
Detected in some
brain:
33.1
cornea:
9.0
pituitary gland:
12.7
retina:
12.2
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UNC80
ENSSSCG00000016153
ENSG00000144406
Unc-80 homolog, NALCN channel complex subunit
Tissue enhanced
Detected in some
brain:
32.7
pineal gland:
16.0
pituitary gland:
22.1
UPF3A
ENSSSCG00000024679
ENSG00000169062
UPF3A, regulator of nonsense mediated mRNA decay
Tissue enhanced
Detected in many
brain:
16.9
pineal gland:
16.5
pituitary gland:
18.6
testis:
20.6
USP51
ENSSSCG00000012349
ENSG00000247746
Ubiquitin specific peptidase 51
Group enriched
Detected in many
ductus deferens:
24.2
epididymis:
26.7
VAMP1
ENSSSCG00000000703
ENSG00000139190
Vesicle associated membrane protein 1
Tissue enriched
Detected in many
brain:
145.7
VAX1
ENSSSCG00000010666
ENSG00000148704
Ventral anterior homeobox 1
Tissue enhanced
Detected in some
brain:
9.2
male glands:
7.8
pituitary gland:
8.6
VEZT
ENSSSCG00000000900
ENSG00000028203
Vezatin, adherens junctions transmembrane protein
Low tissue specificity
Detected in all
VGF
ENSSSCG00000039053
ENSG00000128564
VGF nerve growth factor inducible
Group enriched
Detected in some
pineal gland:
190.9
pituitary gland:
51.7
VSNL1
ENSSSCG00000008615
ENSG00000163032
Visinin like 1
Group enriched
Detected in some
brain:
96.6
pineal gland:
24.9
VSTM2A
ENSSSCG00000015636
ENSG00000170419
V-set and transmembrane domain containing 2A
Tissue enhanced
Detected in some
brain:
37.5
pineal gland:
6.1
pituitary gland:
10.0
VSTM2L
ENSSSCG00000007338
ENSG00000132821
V-set and transmembrane domain containing 2 like
Tissue enriched
Detected in some
brain:
42.9
VSTM5
ENSSSCG00000014950
ENSG00000214376
V-set and transmembrane domain containing 5
Tissue enhanced
Detected in many
brain:
9.3
VWC2
ENSSSCG00000015626
ENSG00000188730
Von Willebrand factor C domain containing 2
Group enriched
Detected in some
brain:
17.8
cervix:
5.8
pituitary gland:
13.2
retina:
8.3
VWC2L
ENSSSCG00000016168
ENSG00000174453
Von Willebrand factor C domain containing protein 2 like
Tissue enriched
Detected in some
brain:
14.1
WDR47
ENSSSCG00000006840
ENSG00000085433
WD repeat domain 47
Tissue enhanced
Detected in all
brain:
34.0
WDR7
ENSSSCG00000004538
ENSG00000091157
WD repeat domain 7
Low tissue specificity
Detected in all
WSCD2
ENSSSCG00000039261
ENSG00000075035
WSC domain containing 2
Tissue enhanced
Detected in many
brain:
30.4
cartilage:
24.1
choroid plexus:
46.3
XPR1
ENSSSCG00000015537
ENSG00000143324
Xenotropic and polytropic retrovirus receptor 1
Low tissue specificity
Detected in all
YAF2
ENSSSCG00000031775
ENSG00000015153
YY1 associated factor 2
Low tissue specificity
Detected in all
YJEFN3
ENSSSCG00000013935
ENSG00000250067
YjeF N-terminal domain containing 3
Tissue enhanced
Detected in some
brain:
13.0
pineal gland:
14.5
pituitary gland:
7.0
ZCCHC18
ENSSSCG00000012541
ENSG00000166707
Zinc finger CCHC-type containing 18
Tissue enhanced
Detected in many
brain:
13.1
lymphoid tissue:
10.5
ZDHHC22
ENSSSCG00000033688
ENSG00000177108
Zinc finger DHHC-type containing 22
Tissue enriched
Detected in some
brain:
47.3
ZFHX2
ENSSSCG00000040339
ENSG00000136367
Zinc finger homeobox 2
Low tissue specificity
Detected in many
ZFR2
ENSSSCG00000013495
ENSG00000105278
Zinc finger RNA binding protein 2
Tissue enhanced
Detected in many
brain:
10.3
pituitary gland:
9.9
retina:
12.4
testis:
9.9
ZIC2
ENSSSCG00000009520
ENSG00000043355
Zic family member 2
Tissue enhanced
Detected in some
brain:
64.2
choroid plexus:
34.0
dura mater:
16.0
pineal gland:
18.3
ZIC3
ENSSSCG00000012705
ENSG00000156925
Zic family member 3
Tissue enhanced
Detected in some
brain:
9.1
pineal gland:
4.0
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