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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ST8SIA6
ENSSSCG00000011034
ENSG00000148488
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Tissue enhanced
Detected in some
epididymis:
36.9
fallopian tube:
13.4
pituitary gland:
11.4
STARD3NL
ENSSSCG00000024028
ENSG00000010270
MLN64 N-terminal domain homolog
Low tissue specificity
Detected in all
STK32A
ENSSSCG00000014418
ENSG00000169302
Serine/threonine kinase 32A
Tissue enhanced
Detected in many
brain:
23.3
pituitary gland:
21.7
STMN2
ENSSSCG00000006160
ENSG00000104435
Stathmin 2
Group enriched
Detected in many
brain:
88.4
pineal gland:
62.2
STMN3
ENSSSCG00000038405
ENSG00000197457
Stathmin 3
Tissue enhanced
Detected in all
brain:
30.7
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STX1B
ENSSSCG00000021238
ENSG00000099365
Syntaxin 1B
Group enriched
Detected in some
brain:
54.9
pineal gland:
26.2
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
STXBP5L
ENSSSCG00000039888
ENSG00000145087
Syntaxin binding protein 5 like
Tissue enhanced
Detected in all
brain:
55.6
pineal gland:
38.0
SULT4A1
ENSSSCG00000000026
ENSG00000130540
Sulfotransferase family 4A member 1
Tissue enriched
Detected in some
brain:
30.0
SUSD4
ENSSSCG00000011176
ENSG00000143502
Sushi domain containing 4
Tissue enhanced
Detected in many
brain:
19.2
pineal gland:
13.8
SV2A
ENSSSCG00000006666
ENSG00000159164
Synaptic vesicle glycoprotein 2A
Group enriched
Detected in many
brain:
45.9
pineal gland:
30.2
retina:
24.4
SV2C
ENSSSCG00000034062
ENSG00000122012
Synaptic vesicle glycoprotein 2C
Tissue enhanced
Detected in some
brain:
25.1
pineal gland:
21.5
salivary gland:
33.9
SVOP
ENSSSCG00000009941
ENSG00000166111
SV2 related protein
Tissue enhanced
Detected in some
brain:
28.4
pineal gland:
10.9
pituitary gland:
6.3
retina:
7.2
testis:
5.6
SYN1
ENSSSCG00000012276
ENSG00000008056
Synapsin-1
Tissue enriched
Detected in many
brain:
71.7
SYN2
ENSSSCG00000023225
ENSG00000157152
Synapsin II
Tissue enriched
Detected in many
brain:
57.8
SYNDIG1
ENSSSCG00000007130
ENSG00000101463
Synapse differentiation inducing 1
Tissue enriched
Detected in some
brain:
24.5
SYNDIG1L
ENSSSCG00000025000
ENSG00000183379
Synapse differentiation inducing 1 like
Group enriched
Detected in some
brain:
30.3
epididymis:
91.3
SYNGR3
ENSSSCG00000008036
ENSG00000127561
Synaptogyrin 3
Tissue enriched
Detected in some
brain:
27.9
SYP
ENSSSCG00000012292
ENSG00000102003
Synaptophysin
Group enriched
Detected in some
brain:
52.9
pineal gland:
78.2
retina:
41.9
SYT1
ENSSSCG00000000948
ENSG00000067715
Synaptotagmin 1
Group enriched
Detected in some
brain:
76.2
retina:
43.4
SYT10
ENSSSCG00000000527
ENSG00000110975
Synaptotagmin 10
Group enriched
Detected in some
brain:
32.1
pituitary gland:
12.1
SYT12
ENSSSCG00000024837
ENSG00000173227
Synaptotagmin 12
Tissue enriched
Detected in many
brain:
22.5
SYT13
ENSSSCG00000031590
ENSG00000019505
Synaptotagmin 13
Tissue enhanced
Detected in some
brain:
32.7
pituitary gland:
9.8
retina:
11.5
SYT14
ENSSSCG00000015610
ENSG00000143469
Synaptotagmin 14
Tissue enhanced
Detected in some
brain:
15.0
pineal gland:
13.4
pituitary gland:
14.0
retina:
21.4
SYT2
ENSSSCG00000010926
ENSG00000143858
Synaptotagmin 2
Tissue enriched
Detected in some
brain:
29.0
SYT4
ENSSSCG00000037079
ENSG00000132872
Synaptotagmin 4
Group enriched
Detected in some
brain:
56.4
pineal gland:
32.2
pituitary gland:
54.3
retina:
14.7
SYT5
ENSSSCG00000021843
ENSG00000129990
Synaptotagmin 5
Tissue enhanced
Detected in many
brain:
38.7
choroid plexus:
16.8
pineal gland:
17.3
pituitary gland:
29.8
TAC1
ENSSSCG00000023592
ENSG00000006128
Tachykinin precursor 1
Tissue enriched
Detected in some
brain:
100.8
TAGLN3
ENSSSCG00000037190
ENSG00000144834
Transgelin 3
Tissue enhanced
Detected in some
brain:
25.8
pineal gland:
38.2
retina:
11.5
TASP1
ENSSSCG00000007074
ENSG00000089123
Taspase 1
Low tissue specificity
Detected in all
TBC1D9
ENSSSCG00000032741
ENSG00000109436
TBC1 domain family member 9
Low tissue specificity
Detected in all
TCEAL7
ENSSSCG00000031556
ENSG00000182916
Transcription elongation factor A like 7
Group enriched
Detected in some
brain:
23.4
pituitary gland:
7.1
TCERG1L
ENSSSCG00000037698
ENSG00000176769
Transcription elongation regulator 1 like
Group enriched
Detected in some
brain:
7.4
pituitary gland:
10.7
testis:
13.2
TCP11L1
ENSSSCG00000030326
ENSG00000176148
T-complex 11 like 1
Low tissue specificity
Detected in all
TDRKH
ENSSSCG00000027770
ENSG00000182134
Tudor and KH domain-containing protein
Tissue enhanced
Detected in many
brain:
13.2
retina:
13.4
testis:
39.6
TENM1
ENSSSCG00000012644
ENSG00000009694
Teneurin transmembrane protein 1
Tissue enhanced
Detected in many
brain:
32.8
epididymis:
13.9
thyroid gland:
29.0
THEM6
ENSSSCG00000032063
ENSG00000130193
Thioesterase superfamily member 6
Tissue enriched
Detected in some
brain:
14.1
THSD7B
ENSSSCG00000040172
ENSG00000144229
Thrombospondin type 1 domain containing 7B
Tissue enhanced
Detected in many
pineal gland:
15.1
pituitary gland:
22.7
retina:
14.6
TMEM130
ENSSSCG00000007605
ENSG00000166448
Transmembrane protein 130
Tissue enhanced
Detected in some
brain:
55.0
pineal gland:
11.4
pituitary gland:
19.3
TMEM132A
ENSSSCG00000013113
ENSG00000006118
Transmembrane protein 132A
Tissue enhanced
Detected in all
brain:
35.1
TMEM132B
ENSSSCG00000009754
ENSG00000139364
Transmembrane protein 132B
Tissue enriched
Detected in some
brain:
23.7
TMEM132E
ENSSSCG00000022987
ENSG00000181291
Transmembrane protein 132E
Tissue enhanced
Detected in many
brain:
13.7
dura mater:
8.8
TMEM145
ENSSSCG00000003022
ENSG00000167619
Transmembrane protein 145
Tissue enhanced
Detected in many
brain:
36.4
TMEM163
ENSSSCG00000015700
ENSG00000152128
Transmembrane protein 163
Tissue enhanced
Detected in many
brain:
21.8
heart:
8.5
lymphoid tissue:
9.7
TMEM169
ENSSSCG00000032327
ENSG00000163449
Transmembrane protein 169
Group enriched
Detected in some
brain:
16.0
pineal gland:
14.4
pituitary gland:
4.1
retina:
7.0
TMEM178A
ENSSSCG00000024293
ENSG00000152154
Transmembrane protein 178A
Tissue enriched
Detected in many
brain:
49.0
TMEM179
ENSSSCG00000039537
ENSG00000258986
Transmembrane protein 179
Group enriched
Detected in some
adrenal gland:
7.2
brain:
22.7
pineal gland:
7.7
pituitary gland:
7.9
retina:
6.8
TMEM198
ENSSSCG00000027541
ENSG00000188760
Transmembrane protein 198
Tissue enhanced
Detected in many
brain:
15.1
TMEM229B
ENSSSCG00000023791
ENSG00000198133
Transmembrane protein 229B
Tissue enhanced
Detected in many
liver:
55.5
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