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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038729
Tissue enhanced
Detected in some
brain:
3.9
ductus deferens:
2.8
na
ENSSSCG00000039121
Tissue enhanced
Detected in some
brain:
14.9
pituitary gland:
6.5
retina:
9.0
testis:
5.9
na
ENSSSCG00000039172
Tissue enhanced
Detected in some
brain:
9.0
pituitary gland:
7.0
retina:
6.3
smooth muscle:
6.5
na
ENSSSCG00000039178
Tissue enhanced
Detected in some
brain:
12.7
pineal gland:
4.9
pituitary gland:
4.6
na
ENSSSCG00000039273
Tissue enhanced
Detected in some
brain:
40.2
pineal gland:
83.3
pituitary gland:
58.5
na
ENSSSCG00000039320
ENSG00000133958
Tissue enhanced
Detected in some
brain:
18.4
pineal gland:
8.7
pituitary gland:
14.1
retina:
9.8
na
ENSSSCG00000039334
Tissue enriched
Detected in some
brain:
123.6
na
ENSSSCG00000039445
ENSG00000183908
Tissue enriched
Detected in some
brain:
20.7
na
ENSSSCG00000039630
Tissue enriched
Detected in some
brain:
213.8
na
ENSSSCG00000039902
Tissue enriched
Detected in some
brain:
115.0
na
ENSSSCG00000039907
ENSG00000185053
Tissue enhanced
Detected in some
brain:
28.2
pituitary gland:
11.2
retina:
6.1
na
ENSSSCG00000040093
Tissue enriched
Detected in some
brain:
60.9
na
ENSSSCG00000040130
Tissue enhanced
Detected in many
brain:
22.8
epididymis:
25.2
pineal gland:
23.1
pituitary gland:
21.0
retina:
32.4
na
ENSSSCG00000040211
Tissue enhanced
Detected in some
brain:
6.1
epididymis:
3.1
pituitary gland:
3.1
retina:
4.6
na
ENSSSCG00000040342
ENSG00000174939
Tissue enriched
Detected in some
brain:
25.2
na
ENSSSCG00000040453
ENSG00000185666
Tissue enhanced
Detected in some
brain:
14.9
retina:
7.6
na
ENSSSCG00000040476
ENSG00000172640
Tissue enhanced
Detected in some
brain:
4.5
retina:
7.2
testis:
6.5
na
ENSSSCG00000040653
Group enriched
Detected in some
brain:
43.2
cornea:
35.0
na
ENSSSCG00000040686
Tissue enhanced
Detected in many
brain:
18.0
skeletal muscle:
15.0
vagus nerve:
16.9
na
ENSSSCG00000040742
ENSG00000172640
Tissue enhanced
Detected in some
pituitary gland:
4.3
retina:
6.6
na
ENSSSCG00000040797
Group enriched
Detected in some
brain:
24.1
cartilage:
7.6
pineal gland:
8.7
pituitary gland:
8.9
retina:
7.2
na
ENSSSCG00000040867
Tissue enhanced
Detected in many
brain:
27.1
dura mater:
18.2
lens:
24.0
retina:
16.9
na
ENSSSCG00000040988
Tissue enhanced
Detected in many
brain:
46.8
male glands:
71.3
vagus nerve:
78.9
NALCN
ENSSSCG00000038949
ENSG00000102452
Sodium leak channel, non-selective
Tissue enhanced
Detected in many
brain:
15.2
pineal gland:
14.9
NANOS3
ENSSSCG00000013759
ENSG00000187556
Nanos C2HC-type zinc finger 3
Tissue enhanced
Detected in many
brain:
8.1
NAP1L2
ENSSSCG00000012415
ENSG00000186462
Nucleosome assembly protein 1 like 2
Group enriched
Detected in some
brain:
35.0
choroid plexus:
9.8
pineal gland:
19.6
pituitary gland:
9.0
retina:
11.0
NAPB
ENSSSCG00000031219
ENSG00000125814
NSF attachment protein beta
Group enriched
Detected in many
brain:
39.5
pineal gland:
19.0
retina:
14.7
NAT8L
ENSSSCG00000033541
ENSG00000185818
N-acetyltransferase 8 like
Tissue enriched
Detected in some
brain:
39.9
NAV3
ENSSSCG00000029249
ENSG00000067798
Neuron navigator 3
Tissue enhanced
Detected in many
brain:
28.0
NCALD
ENSSSCG00000006059
ENSG00000104490
Neurocalcin-delta
Tissue enhanced
Detected in many
brain:
50.1
lens:
34.5
NCAM2
ENSSSCG00000012020
ENSG00000154654
Neural cell adhesion molecule 2
Tissue enhanced
Detected in some
brain:
40.1
pituitary gland:
10.6
retina:
7.8
NCAN
ENSSSCG00000032131
ENSG00000130287
Neurocan
Tissue enriched
Detected in some
brain:
43.4
NCDN
ENSSSCG00000031786
ENSG00000020129
Neurochondrin
Group enriched
Detected in all
brain:
88.3
pineal gland:
30.1
NCKIPSD
ENSSSCG00000011364
ENSG00000213672
NCK interacting protein with SH3 domain
Tissue enhanced
Detected in all
brain:
21.1
NCOA7
ENSSSCG00000004222
ENSG00000111912
Nuclear receptor coactivator 7
Low tissue specificity
Detected in all
NDST3
ENSSSCG00000009115
ENSG00000164100
N-deacetylase and N-sulfotransferase 3
Tissue enhanced
Detected in all
brain:
28.1
thyroid gland:
26.9
NECAB2
ENSSSCG00000038048
ENSG00000103154
N-terminal EF-hand calcium binding protein 2
Tissue enriched
Detected in some
brain:
61.6
NECAB3
ENSSSCG00000029626
ENSG00000125967
N-terminal EF-hand calcium binding protein 3
Tissue enhanced
Detected in many
brain:
24.0
NEFH
ENSSSCG00000009979
ENSG00000100285
Neurofilament heavy
Tissue enriched
Detected in some
brain:
168.4
NEFL
ENSSSCG00000009649
ENSG00000277586
Neurofilament light polypeptide
Group enriched
Detected in some
brain:
146.6
retina:
47.6
NEFM
ENSSSCG00000009648
ENSG00000104722
Neurofilament medium
Group enriched
Detected in some
adrenal gland:
63.7
brain:
122.6
NEGR1
ENSSSCG00000025085
ENSG00000172260
Neuronal growth regulator 1
Tissue enhanced
Detected in many
brain:
65.6
pineal gland:
21.1
pituitary gland:
20.4
retina:
20.9
NEIL2
ENSSSCG00000028699
ENSG00000154328
Nei like DNA glycosylase 2
Low tissue specificity
Detected in all
NELL1
ENSSSCG00000039940
ENSG00000165973
Neural EGFL like 1
Tissue enhanced
Detected in many
brain:
22.0
pineal gland:
18.5
NELL2
ENSSSCG00000000802
ENSG00000184613
Neural EGFL like 2
Group enriched
Detected in some
brain:
61.7
pituitary gland:
26.7
NETO2
ENSSSCG00000026318
ENSG00000171208
Neuropilin and tolloid like 2
Group enriched
Detected in many
brain:
27.2
cartilage:
76.4
NEXMIF
ENSSSCG00000035689
ENSG00000050030
Neurite extension and migration factor
Tissue enhanced
Detected in some
brain:
14.2
pituitary gland:
8.0
NGB
ENSSSCG00000002399
ENSG00000165553
Neuroglobin
Tissue enriched
Detected in many
brain:
35.2
NHLH2
ENSSSCG00000006744
ENSG00000177551
Nescient helix-loop-helix 2
Group enriched
Detected in some
brain:
15.3
retina:
13.9
NKAIN1
ENSSSCG00000032193
ENSG00000084628
Sodium/potassium transporting ATPase interacting 1
Tissue enhanced
Detected in many
adrenal gland:
21.9
brain:
18.4
ovary:
31.1
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