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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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65 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTN4
ENSSSCG00000002965
ENSG00000130402
Actinin alpha 4
Low tissue specificity
Detected in all
ANLN
ENSSSCG00000016658
ENSG00000011426
Anillin actin binding protein
Tissue enriched
Detected in many
brain:
111.4
AQP2
ENSSSCG00000021193
ENSG00000167580
Aquaporin-2
Group enriched
Detected in some
kidney:
212.6
male glands:
103.9
ARHGDIA
ENSSSCG00000034058
ENSG00000141522
Rho GDP-dissociation inhibitor 1
Low tissue specificity
Detected in all
ATP6V0A4
ENSSSCG00000016516
ENSG00000105929
ATPase H+ transporting V0 subunit a4
Group enriched
Detected in many
kidney:
38.1
salivary gland:
24.9
upper respiratory system:
22.4
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CD151
ENSSSCG00000012840
ENSG00000177697
CD151 antigen
Low tissue specificity
Detected in all
CLCN5
ENSSSCG00000023026
ENSG00000171365
H(+)/Cl(-) exchange transporter 5
Tissue enhanced
Detected in many
kidney:
46.2
COL4A4
ENSSSCG00000016244
ENSG00000081052
Collagen type IV alpha 4 chain
Group enriched
Detected in some
cornea:
48.5
lens:
82.9
COQ8B
ENSSSCG00000026331
ENSG00000123815
Coenzyme Q8B
Low tissue specificity
Detected in all
CRB2
ENSSSCG00000005584
ENSG00000148204
Crumbs 2, cell polarity complex component
Tissue enhanced
Detected in some
adipose tissue:
22.8
cornea:
11.4
mesothelial tissue:
22.3
CUL3
ENSSSCG00000016234
ENSG00000036257
Cullin 3
Tissue enhanced
Detected in all
lens:
78.4
testis:
58.9
DGKE
ENSSSCG00000017615
ENSG00000153933
Diacylglycerol kinase epsilon
Low tissue specificity
Detected in all
EMP2
ENSSSCG00000037065
ENSG00000213853
Epithelial membrane protein 2
Low tissue specificity
Detected in all
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
HNF1B
ENSSSCG00000022417
ENSG00000275410
Hepatocyte nuclear factor 1-beta
Tissue enhanced
Detected in many
gallbladder:
24.5
kidney:
75.6
HPSE2
ENSSSCG00000010535
ENSG00000172987
Heparanase 2 (inactive)
Tissue enriched
Detected in many
cervix:
86.3
KANK2
ENSSSCG00000039194
ENSG00000197256
KN motif and ankyrin repeat domains 2
Low tissue specificity
Detected in all
KLHL3
ENSSSCG00000014321
ENSG00000146021
Kelch like family member 3
Tissue enhanced
Detected in many
liver:
27.0
vagus nerve:
19.8
LAMB2
ENSSSCG00000011377
ENSG00000172037
Laminin subunit beta 2
Low tissue specificity
Detected in all
LRIG2
ENSSSCG00000034581
ENSG00000198799
Leucine rich repeats and immunoglobulin like domains 2
Low tissue specificity
Detected in all
MAGI2
ENSSSCG00000031780
ENSG00000187391
Membrane associated guanylate kinase, WW and PDZ domain containing 2
Tissue enhanced
Detected in many
brain:
31.7
lens:
39.6
MYO1E
ENSSSCG00000004587
ENSG00000157483
Myosin IE
Low tissue specificity
Detected in all
na
ENSSSCG00000005735
ENSG00000165699
Tissue enhanced
Detected in many
testis:
22.5
na
ENSSSCG00000006525
ENSG00000185499
Tissue enhanced
Detected in many
ductus deferens:
54.4
gallbladder:
54.0
kidney:
50.9
stomach:
70.9
na
ENSSSCG00000008314
ENSG00000116039
Tissue enhanced
Detected in some
fallopian tube:
33.6
kidney:
103.8
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000016245
ENSG00000169031
Group enriched
Detected in some
cornea:
40.8
lens:
74.9
na
ENSSSCG00000023611
ENSG00000168477
Tenascin-X precursor
Tissue enhanced
Detected in many
cartilage:
84.7
synovial tissue:
96.3
na
ENSSSCG00000030197
ENSG00000198087
CD2-associated protein
Low tissue specificity
Detected in all
na
ENSSSCG00000033720
ENSG00000203485
Tissue enhanced
Detected in many
stomach:
65.5
NPHS1
ENSSSCG00000029284
ENSG00000161270
NPHS1, nephrin
Tissue enriched
Detected in some
vagus nerve:
34.0
NPHS2
ENSSSCG00000015526
ENSG00000116218
NPHS2, podocin
Tissue enriched
Detected in some
kidney:
69.5
NR3C2
ENSSSCG00000037766
ENSG00000151623
Nuclear receptor subfamily 3 group C member 2
Low tissue specificity
Detected in all
NUP107
ENSSSCG00000000486
ENSG00000111581
Nucleoporin 107
Low tissue specificity
Detected in all
NUP205
ENSSSCG00000030386
ENSG00000155561
Nucleoporin 205
Low tissue specificity
Detected in all
NUP93
ENSSSCG00000025830
ENSG00000102900
Nuclear pore complex protein Nup93
Low tissue specificity
Detected in all
OCRL
ENSSSCG00000012650
ENSG00000122126
OCRL, inositol polyphosphate-5-phosphatase
Tissue enriched
Detected in all
ovary:
87.6
PAX2
ENSSSCG00000010556
ENSG00000075891
Paired box 2
Tissue enhanced
Detected in some
ductus deferens:
41.9
epididymis:
182.3
kidney:
41.0
male glands:
82.9
PLCE1
ENSSSCG00000010483
ENSG00000138193
Phospholipase C epsilon 1
Tissue enhanced
Detected in many
cartilage:
33.9
stomach:
42.4
PTPRO
ENSSSCG00000000601
ENSG00000151490
Protein tyrosine phosphatase, receptor type O
Tissue enriched
Detected in some
lens:
86.9
REN
ENSSSCG00000031235
ENSG00000143839
Renin
Low tissue specificity
Detected in all
ROBO2
ENSSSCG00000012002
ENSG00000185008
Roundabout guidance receptor 2
Tissue enhanced
Detected in many
brain:
27.0
retina:
23.6
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SEC61A1
ENSSSCG00000011621
ENSG00000058262
Protein transport protein Sec61 subunit alpha
Low tissue specificity
Detected in all
SGPL1
ENSSSCG00000010274
ENSG00000166224
Sphingosine-1-phosphate lyase 1
Low tissue specificity
Detected in all
SLC22A12
ENSSSCG00000013025
ENSG00000197891
Solute carrier family 22 member 12
Tissue enriched
Detected in single
kidney:
87.1
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