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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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95 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCB6
ENSSSCG00000016210
ENSG00000115657
ATP binding cassette subfamily B member 6 (Langereis blood group)
Tissue enhanced
Detected in all
large intestine:
37.4
ADAR
ENSSSCG00000006543
ENSG00000160710
Adenosine deaminase, RNA specific
Low tissue specificity
Detected in all
AP1S3
ENSSSCG00000040847
ENSG00000152056
Adaptor related protein complex 1 sigma 3 subunit
Tissue enhanced
Detected in many
male glands:
31.5
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
CARD14
ENSSSCG00000017154
ENSG00000141527
Caspase recruitment domain family member 14
Tissue enhanced
Detected in some
male glands:
33.3
salivary gland:
28.2
skin:
24.6
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CD151
ENSSSCG00000012840
ENSG00000177697
CD151 antigen
Low tissue specificity
Detected in all
CD247
ENSSSCG00000006309
ENSG00000198821
T-cell surface glycoprotein CD3 zeta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
72.3
testis:
28.8
CDSN
ENSSSCG00000030903
ENSG00000204539
Corneodesmosin
Tissue enriched
Detected in some
skin:
49.1
COL6A5
ENSSSCG00000011186
ENSG00000172752
Collagen type VI alpha 5 chain
Tissue enhanced
Detected in many
gallbladder:
17.5
large intestine:
23.0
small intestine:
15.1
stomach:
30.0
COL7A1
ENSSSCG00000011355
ENSG00000114270
Collagen type VII alpha 1 chain
Tissue enhanced
Detected in many
skin:
55.8
CTNNB1
ENSSSCG00000011274
ENSG00000168036
Catenin beta-1
Low tissue specificity
Detected in all
CTSC
ENSSSCG00000014924
ENSG00000109861
Cathepsin C
Tissue enriched
Detected in many
ovary:
200.8
CYLD
ENSSSCG00000040286
ENSG00000083799
CYLD lysine 63 deubiquitinase
Low tissue specificity
Detected in all
DSC3
ENSSSCG00000024800
ENSG00000134762
Desmocollin 3
Tissue enhanced
Detected in many
cornea:
77.5
mouth:
100.5
skin:
50.9
DSG4
ENSSSCG00000020740
ENSG00000175065
Desmoglein 4
Tissue enriched
Detected in some
skin:
62.0
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
ERCC3
ENSSSCG00000015721
ENSG00000163161
ERCC excision repair 3, TFIIH core complex helicase subunit
Low tissue specificity
Detected in all
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERCC8
ENSSSCG00000016934
ENSG00000049167
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Low tissue specificity
Detected in all
FAM111B
ENSSSCG00000013147
ENSG00000189057
Family with sequence similarity 111 member B
Low tissue specificity
Detected in many
FBN1
ENSSSCG00000004658
ENSG00000166147
Fibrillin-1 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
106.5
FERMT1
ENSSSCG00000007052
ENSG00000101311
Fermitin family member 1
Low tissue specificity
Detected in many
FGF5
ENSSSCG00000031272
ENSG00000138675
Fibroblast growth factor 5
Tissue enhanced
Detected in many
skin:
11.7
FZD6
ENSSSCG00000006052
ENSG00000164930
Frizzled-6 precursor
Low tissue specificity
Detected in all
GTF2E2
ENSSSCG00000015845
ENSG00000197265
Transcription initiation factor IIE subunit beta
Low tissue specificity
Detected in all
GTF2H5
ENSSSCG00000024019
ENSG00000272047
General transcription factor IIH subunit 5
Low tissue specificity
Detected in all
HR
ENSSSCG00000009616
ENSG00000168453
Lysine-specific demethylase hairless
Tissue enhanced
Detected in many
mouth:
21.3
skin:
49.7
IL10
ENSSSCG00000015652
ENSG00000136634
Interleukin-10
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
IL12RB2
ENSSSCG00000003799
ENSG00000081985
Interleukin-12 receptor subunit beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
38.6
IL13
ENSSSCG00000014281
ENSG00000169194
Interleukin-13
Tissue enhanced
Detected in many
testis:
6.9
IL16
ENSSSCG00000001787
ENSG00000172349
Interleukin 16
Tissue enhanced
Detected in many
brain:
33.7
cartilage:
33.1
lymphoid tissue:
27.4
mesothelial tissue:
27.3
vagus nerve:
24.3
IL1A
ENSSSCG00000008090
ENSG00000115008
Interleukin-1 alpha
Tissue enhanced
Detected in many
lung:
17.9
IL1R1
ENSSSCG00000008162
ENSG00000115594
Interleukin 1 receptor type 1
Tissue enhanced
Detected in all
liver:
74.2
IL23R
ENSSSCG00000003801
ENSG00000162594
Interleukin-23 receptor
Low tissue specificity
Detected in all
IL31RA
ENSSSCG00000016915
ENSG00000164509
Interleukin 31 receptor A
Tissue enhanced
Detected in some
male glands:
22.8
IL4R
ENSSSCG00000007817
ENSG00000077238
Interleukin-4 receptor subunit alpha precursor
Low tissue specificity
Detected in many
IRAK2
ENSSSCG00000011570
ENSG00000134070
Interleukin 1 receptor associated kinase 2
Low tissue specificity
Detected in many
IRF5
ENSSSCG00000016573
ENSG00000128604
Interferon regulatory factor 5
Tissue enhanced
Detected in many
lymphoid tissue:
37.5
ITPR2
ENSSSCG00000000555
ENSG00000123104
Inositol 1,4,5-trisphosphate receptor type 2
Low tissue specificity
Detected in many
KITLG
ENSSSCG00000035495
ENSG00000049130
Kit ligand precursor
Low tissue specificity
Detected in many
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
KRT74
ENSSSCG00000028334
ENSG00000170484
Keratin 74
Tissue enriched
Detected in some
skin:
37.9
KRT75
ENSSSCG00000000236
ENSG00000170454
Keratin 75
Tissue enriched
Detected in some
skin:
78.0
LBR
ENSSSCG00000032397
ENSG00000143815
Lamin B receptor
Tissue enhanced
Detected in all
lymphoid tissue:
40.7
LIPH
ENSSSCG00000011793
ENSG00000163898
Lipase H
Tissue enhanced
Detected in many
ovary:
13.1
stomach:
28.9
LPAR6
ENSSSCG00000036063
ENSG00000139679
Lysophosphatidic acid receptor 6
Low tissue specificity
Detected in all
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
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