We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies.
More information
.
Don't show this again.
Search
Fields »
AND
NOT
Field
All
Gene name
Human disease related genes
Uniprot keyword
Chromosome
External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
Sort by
Term
Gene name
Class
Cancers
Cardiovascular diseases
Congenital disorders of metabolism
Congenital malformations
Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
Nervous system diseases
Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
Add
Cancel
MENU
HELP
THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
DICTIONARY
THE PROJECT
INTRODUCTION
CONTACT
TECHNICAL DATA
ASSAYS & ANNOTATION
DISCLAIMER
DOWNLOADABLE DATA
HELP & FAQ
LICENCE & CITATION
PRIVACY STATEMENT
RELEASE HISTORY
95 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
Set Default Columns
Apply
1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
Select format to download:
Download TSV
Copy TSV link
Download JSON
Copy JSON link
Show / hide columns
Download:
TSV
|
JSON
|
Custom TSV/JSON
« prev
| Page
of 2
Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000008088
ENSG00000125538
Tissue enhanced
Detected in some
bone marrow:
1.2
testis:
1.2
na
ENSSSCG00000011436
ENSG00000173366,ENSG00000239732
Toll-like receptor 9
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
na
ENSSSCG00000015488
ENSG00000117586
Tumor necrosis factor ligand superfamily member 4
Low tissue specificity
Detected in all
na
ENSSSCG00000016768
ENSG00000168303
Low tissue specificity
Detected in all
na
ENSSSCG00000022361
ENSG00000153064
Tissue enhanced
Detected in many
lymphoid tissue:
47.9
na
ENSSSCG00000032059
ENSG00000205155
Low tissue specificity
Detected in all
na
ENSSSCG00000032973
ENSG00000125352,ENSG00000139797
Low tissue specificity
Detected in all
na
ENSSSCG00000033238
ENSG00000091592
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
synovial tissue:
22.3
na
ENSSSCG00000036342
ENSG00000127507
Low tissue specificity
Detected in all
na
ENSSSCG00000038121
ENSG00000159450
Group enriched
Detected in some
mouth:
37.6
skin:
117.4
NCSTN
ENSSSCG00000006385
ENSG00000162736
Nicastrin
Low tissue specificity
Detected in all
NOD1
ENSSSCG00000016678
ENSG00000106100
Nucleotide-binding oligomerization domain-containing protein 1
Tissue enhanced
Detected in many
lens:
42.6
NOD2
ENSSSCG00000038073
ENSG00000167207
Nucleotide-binding oligomerization domain-containing protein 2
Low tissue specificity
Detected in many
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
OSMR
ENSSSCG00000016851
ENSG00000145623
Oncostatin M receptor
Low tissue specificity
Detected in all
PADI3
ENSSSCG00000003482
ENSG00000142619
Peptidyl arginine deiminase 3
Group enriched
Detected in some
cornea:
18.0
skin:
30.9
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PLCD1
ENSSSCG00000027550
ENSG00000187091
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
Tissue enhanced
Detected in all
cartilage:
55.6
POFUT1
ENSSSCG00000007244
ENSG00000101346
GDP-fucose protein O-fucosyltransferase 1 precursor
Low tissue specificity
Detected in all
PSEN1
ENSSSCG00000002340
ENSG00000080815
Presenilin-1
Low tissue specificity
Detected in all
PTCH1
ENSSSCG00000027312
ENSG00000185920
Patched 1
Tissue enhanced
Detected in all
cartilage:
55.5
vagus nerve:
69.7
PTCH2
ENSSSCG00000031977
ENSG00000117425
Patched 2
Tissue enhanced
Detected in many
cartilage:
28.8
PTPN22
ENSSSCG00000006764
ENSG00000134242
Protein tyrosine phosphatase, non-receptor type 22
Tissue enhanced
Detected in many
large intestine:
13.3
lymphoid tissue:
29.9
RIN2
ENSSSCG00000028004
ENSG00000132669
Ras and Rab interactor 2
Low tissue specificity
Detected in all
RSPO4
ENSSSCG00000007197
ENSG00000101282
R-spondin 4
Tissue enriched
Detected in some
synovial tissue:
33.8
SASH1
ENSSSCG00000033175
ENSG00000111961
SAM and SH3 domain containing 1
Low tissue specificity
Detected in all
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
SNRPE
ENSSSCG00000023562
ENSG00000182004
Small nuclear ribonucleoprotein E
Low tissue specificity
Detected in all
SPINK5
ENSSSCG00000014422
ENSG00000133710
Serine peptidase inhibitor, Kazal type 5
Tissue enhanced
Detected in some
esophagus:
19.0
mouth:
96.6
skin:
26.0
STAT4
ENSSSCG00000016059
ENSG00000138378
Signal transducer and activator of transcription 4
Tissue enriched
Detected in some
testis:
72.7
SUFU
ENSSSCG00000010586
ENSG00000107882
SUFU negative regulator of hedgehog signaling
Tissue enhanced
Detected in all
epididymis:
70.9
TGM3
ENSSSCG00000026043
ENSG00000125780
Transglutaminase 3
Tissue enriched
Detected in some
stomach:
124.6
TLR2
ENSSSCG00000009002
ENSG00000137462
Toll-like receptor 2 precursor
Low tissue specificity
Detected in all
TMC6
ENSSSCG00000032562
ENSG00000141524
Transmembrane channel like 6
Tissue enhanced
Detected in many
lymphoid tissue:
49.7
stomach:
34.2
TMC8
ENSSSCG00000033592
ENSG00000167895
Transmembrane channel like 8
Tissue enhanced
Detected in many
lymphoid tissue:
39.0
TNF
ENSSSCG00000001404
ENSG00000232810
Tumor necrosis factor Tumor necrosis factor, membrane form Intracellular domain 1 Intracellular domain 2 C-domain 1 C-domain 2 Tumor necrosis factor, soluble form
Low tissue specificity
Detected in all
TNFAIP3
ENSSSCG00000004154
ENSG00000118503
Tumor necrosis factor alpha-induced protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
57.5
TNIP1
ENSSSCG00000017091
ENSG00000145901
TNFAIP3-interacting protein 1
Low tissue specificity
Detected in all
TRAF3IP2
ENSSSCG00000004420
ENSG00000056972
TRAF3 interacting protein 2
Low tissue specificity
Detected in many
USB1
ENSSSCG00000002807
ENSG00000103005
U6 snRNA phosphodiesterase
Low tissue specificity
Detected in all
UVSSA
ENSSSCG00000037035
ENSG00000163945
UV stimulated scaffold protein A
Low tissue specificity
Detected in all
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
ZNF750
ENSSSCG00000017135
ENSG00000141579
Zinc finger protein 750
Tissue enhanced
Detected in many
male glands:
31.9
salivary gland:
42.0
skin:
28.1
« prev
| Page
of 2