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UMAP gene cluster
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Keyword
Chromosome
1
2
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4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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50 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ARMC4
ENSSSCG00000011069
ENSG00000169126
Armadillo repeat containing 4
Tissue enhanced
Detected in many
choroid plexus:
24.0
fallopian tube:
53.8
upper respiratory system:
36.3
C11orf70
ENSSSCG00000014980
ENSG00000137691
Chromosome 11 open reading frame 70
Tissue enhanced
Detected in many
choroid plexus:
29.2
kidney:
27.5
testis:
45.1
CCDC114
ENSSSCG00000026689
ENSG00000105479
Coiled-coil domain containing 114
Tissue enhanced
Detected in many
choroid plexus:
27.8
fallopian tube:
35.7
lung:
33.0
CCDC151
ENSSSCG00000013625
ENSG00000198003
Coiled-coil domain containing 151
Group enriched
Detected in many
kidney:
30.6
male glands:
44.2
thyroid gland:
49.5
CCDC40
ENSSSCG00000017158
ENSG00000141519
Coiled-coil domain containing 40
Tissue enhanced
Detected in some
fallopian tube:
26.3
lung:
12.8
testis:
16.3
upper respiratory system:
19.8
CCDC65
ENSSSCG00000000179
ENSG00000139537
Coiled-coil domain containing 65
Tissue enhanced
Detected in many
fallopian tube:
21.2
testis:
40.1
CCNO
ENSSSCG00000026849
ENSG00000152669
Cyclin O
Tissue enhanced
Detected in many
lung:
7.3
upper respiratory system:
20.5
CSF2RB
ENSSSCG00000000136
ENSG00000100368
Colony stimulating factor 2 receptor beta common subunit
Tissue enhanced
Detected in many
lymphoid tissue:
25.3
DNAAF1
ENSSSCG00000002675
ENSG00000154099
Dynein axonemal assembly factor 1
Tissue enriched
Detected in some
testis:
116.9
DNAAF2
ENSSSCG00000005007
ENSG00000165506
Dynein axonemal assembly factor 2
Low tissue specificity
Detected in all
DNAAF4
ENSSSCG00000004608
ENSG00000256061
Dynein axonemal assembly factor 4
Tissue enhanced
Detected in many
lens:
23.0
testis:
23.0
DNAAF5
ENSSSCG00000007543
ENSG00000164818
Dynein axonemal assembly factor 5
Low tissue specificity
Detected in all
DNAH11
ENSSSCG00000015379
ENSG00000105877
Dynein axonemal heavy chain 11
Tissue enhanced
Detected in many
choroid plexus:
16.0
fallopian tube:
31.5
lung:
27.2
upper respiratory system:
22.7
DNAI2
ENSSSCG00000024357
ENSG00000171595
Dynein axonemal intermediate chain 2
Tissue enhanced
Detected in some
choroid plexus:
13.5
fallopian tube:
27.7
lung:
12.1
testis:
25.2
upper respiratory system:
19.2
DNAJB13
ENSSSCG00000014832
ENSG00000187726
DnaJ homolog subfamily B member 13
Tissue enhanced
Detected in some
choroid plexus:
28.8
fallopian tube:
13.1
testis:
37.3
upper respiratory system:
18.2
DNAL1
ENSSSCG00000039469
ENSG00000119661
Dynein axonemal light chain 1
Tissue enhanced
Detected in all
pineal gland:
29.7
DRC1
ENSSSCG00000008568
ENSG00000157856
Dynein regulatory complex subunit 1
Tissue enhanced
Detected in many
fallopian tube:
38.9
testis:
22.9
upper respiratory system:
25.4
FOXF1
ENSSSCG00000038460
ENSG00000103241
Forkhead box F1
Tissue enhanced
Detected in many
gallbladder:
34.5
smooth muscle:
40.2
urinary bladder:
40.6
GAS8
ENSSSCG00000002633
ENSG00000141013
Growth arrest specific 8
Low tissue specificity
Detected in all
HMOX1
ENSSSCG00000039745
ENSG00000100292
Heme oxygenase 1
Tissue enriched
Detected in many
lymphoid tissue:
118.9
HYDIN
ENSSSCG00000040973
ENSG00000157423
HYDIN, axonemal central pair apparatus protein
Tissue enhanced
Detected in some
choroid plexus:
18.5
fallopian tube:
61.3
lung:
21.1
upper respiratory system:
31.1
LRRC6
ENSSSCG00000005952
ENSG00000129295
Protein tilB homolog
Tissue enhanced
Detected in all
fallopian tube:
22.4
testis:
35.1
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
MARS
ENSSSCG00000023318
ENSG00000166986
Methionyl-tRNA synthetase
Low tissue specificity
Detected in all
na
ENSSSCG00000011768
ENSG00000284862
Low tissue specificity
Detected in all
na
ENSSSCG00000017345
ENSG00000167131,ENSG00000214447
Tissue enhanced
Detected in all
testis:
14.6
na
ENSSSCG00000023834
ENSG00000111834
Tissue enhanced
Detected in some
choroid plexus:
14.4
fallopian tube:
42.5
upper respiratory system:
32.8
na
ENSSSCG00000028682
ENSG00000167646
Tissue enriched
Detected in many
heart:
209.7
na
ENSSSCG00000033452
ENSG00000117983
Group enriched
Detected in many
esophagus:
840.8
male glands:
548.7
na
ENSSSCG00000038715
ENSG00000154803
Low tissue specificity
Detected in all
na
ENSSSCG00000039342
ENSG00000122735
Tissue enhanced
Detected in many
fallopian tube:
27.1
testis:
18.6
upper respiratory system:
23.3
na
ENSSSCG00000040827
ENSG00000159079,ENSG00000265590
Low tissue specificity
Detected in all
NME8
ENSSSCG00000015448
ENSG00000086288
NME/NM23 family member 8
Tissue enriched
Detected in some
testis:
51.9
PIH1D3
ENSSSCG00000012558
ENSG00000080572
PIH1 domain containing 3
Tissue enhanced
Detected in some
choroid plexus:
17.1
fallopian tube:
9.3
testis:
18.0
upper respiratory system:
7.2
RSPH1
ENSSSCG00000040224
ENSG00000160188
Radial spoke head 1 homolog
Low tissue specificity
Detected in all
RSPH3
ENSSSCG00000004055
ENSG00000130363
Radial spoke head 3 homolog
Low tissue specificity
Detected in all
RSPH9
ENSSSCG00000001691
ENSG00000172426
Radial spoke head 9 homolog
Tissue enhanced
Detected in many
testis:
31.1
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SERPINA1
ENSSSCG00000002476
ENSG00000197249
Alpha-1-antitrypsin precursor
Tissue enhanced
Detected in many
cartilage:
61.3
gallbladder:
123.2
liver:
272.0
SFTPA1
ENSSSCG00000010336
ENSG00000122852,ENSG00000185303
Pulmonary surfactant-associated protein A precursor
Tissue enriched
Detected in some
lung:
264.6
SFTPB
ENSSSCG00000008229
ENSG00000168878
Pulmonary surfactant-associated protein B precursor
Tissue enriched
Detected in some
lung:
227.0
SFTPC
ENSSSCG00000009619
ENSG00000168484
Pulmonary surfactant-associated protein C
Tissue enriched
Detected in some
lung:
321.0
SLC34A2
ENSSSCG00000008758
ENSG00000157765
Sodium-dependent phosphate transport protein 2B
Tissue enriched
Detected in many
lung:
93.5
SPAG1
ENSSSCG00000027587
ENSG00000104450
Sperm associated antigen 1
Tissue enhanced
Detected in all
choroid plexus:
34.9
testis:
48.1
TERT
ENSSSCG00000017118
ENSG00000164362
Telomerase reverse transcriptase
Tissue enhanced
Detected in many
small intestine:
13.6
stomach:
14.5
TTC25
ENSSSCG00000017415
ENSG00000204815
Tetratricopeptide repeat domain 25
Low tissue specificity
Detected in all
ZMYND10
ENSSSCG00000011408
ENSG00000004838
Zinc finger MYND-type containing 10
Tissue enhanced
Detected in some
choroid plexus:
22.3
fallopian tube:
36.4
testis:
50.2
upper respiratory system:
41.9
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