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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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75 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AK7
ENSSSCG00000002504
ENSG00000140057
Adenylate kinase 7
Tissue enhanced
Detected in some
choroid plexus:
32.5
fallopian tube:
49.5
upper respiratory system:
26.9
AMH
ENSSSCG00000035812
ENSG00000104899
Muellerian-inhibiting factor precursor
Low tissue specificity
Detected in many
AMHR2
ENSSSCG00000000271
ENSG00000135409
Anti-Muellerian hormone type-2 receptor precursor
Tissue enriched
Detected in many
thyroid gland:
58.3
AR
ENSSSCG00000012371
ENSG00000169083
Androgen receptor
Tissue enhanced
Detected in many
cervix:
42.8
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
BMP15
ENSSSCG00000012310
ENSG00000130385
Bone morphogenetic protein 15
Tissue enriched
Detected in single
ovary:
7.5
BRDT
ENSSSCG00000023654
ENSG00000137948
Bromodomain testis associated
Tissue enriched
Detected in many
testis:
97.4
CATSPER1
ENSSSCG00000012959
ENSG00000175294
Cation channel sperm-associated protein 1
Tissue enriched
Detected in some
testis:
45.3
CBX2
ENSSSCG00000024261
ENSG00000173894
Chromobox 2
Low tissue specificity
Detected in all
CFAP65
ENSSSCG00000016203
ENSG00000181378
Cilia and flagella associated protein 65
Group enriched
Detected in some
fallopian tube:
37.0
lung:
20.9
testis:
24.4
upper respiratory system:
27.7
CFAP69
ENSSSCG00000015303
ENSG00000105792
Cilia and flagella associated protein 69
Tissue enhanced
Detected in many
choroid plexus:
19.0
fallopian tube:
34.0
testis:
23.8
CFAP70
ENSSSCG00000010298
ENSG00000156042
Cilia and flagella associated protein 70
Tissue enhanced
Detected in many
fallopian tube:
28.7
testis:
53.2
COL4A5
ENSSSCG00000012572
ENSG00000188153
Collagen type IV alpha 5 chain
Tissue enriched
Detected in many
lens:
107.3
DHH
ENSSSCG00000000188
ENSG00000139549
Desert hedgehog
Tissue enriched
Detected in some
vagus nerve:
39.7
DIAPH2
ENSSSCG00000012474
ENSG00000147202
Diaphanous related formin 2
Low tissue specificity
Detected in all
DPY19L2
ENSSSCG00000016663
ENSG00000177990
Dpy-19 like 2
Tissue enriched
Detected in some
testis:
65.2
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
FANCM
ENSSSCG00000005000
ENSG00000187790
Fanconi anemia complementation group M
Low tissue specificity
Detected in all
FH
ENSSSCG00000028178
ENSG00000091483
Fumarate hydratase, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
54.3
FIGLA
ENSSSCG00000008321
ENSG00000183733
Folliculogenesis specific bHLH transcription factor
Tissue enriched
Detected in some
retina:
12.0
FMR1
ENSSSCG00000012727
ENSG00000102081
Fragile X mental retardation 1
Low tissue specificity
Detected in all
FSHR
ENSSSCG00000029084
ENSG00000170820
Follicle-stimulating hormone receptor precursor
Tissue enriched
Detected in some
testis:
18.0
FSIP2
ENSSSCG00000016024
ENSG00000188738
Fibrous sheath interacting protein 2
Tissue enriched
Detected in single
testis:
91.5
GDF9
ENSSSCG00000014288
ENSG00000164404
Growth/differentiation factor 9 precursor
Low tissue specificity
Detected in all
HFM1
ENSSSCG00000006912
ENSG00000162669
HFM1, ATP dependent DNA helicase homolog
Low tissue specificity
Detected in all
HSD17B3
ENSSSCG00000010937
ENSG00000130948
Testosterone 17-beta-dehydrogenase 3
Tissue enriched
Detected in some
testis:
32.9
INSL3
ENSSSCG00000013887
ENSG00000248099
Insulin-like 3 Insulin-like 3 B chain Insulin-like 3 A chain
Tissue enriched
Detected in some
testis:
468.6
KLHL10
ENSSSCG00000033629
ENSG00000161594
Kelch like family member 10
Tissue enriched
Detected in single
testis:
75.7
MAMLD1
ENSSSCG00000012741
ENSG00000013619
Mastermind like domain containing 1
Tissue enhanced
Detected in many
epididymis:
55.4
MAP3K1
ENSSSCG00000016918
ENSG00000095015
Mitogen-activated protein kinase kinase kinase 1
Low tissue specificity
Detected in all
MCM8
ENSSSCG00000007047
ENSG00000125885
Minichromosome maintenance 8 homologous recombination repair factor
Low tissue specificity
Detected in all
MED12
ENSSSCG00000012396
ENSG00000184634
Mediator complex subunit 12
Low tissue specificity
Detected in all
MEIOB
ENSSSCG00000025711
ENSG00000162039
Meiosis specific with OB domains
Low tissue specificity
Detected in all
na
ENSSSCG00000004246
ENSG00000111877
Low tissue specificity
Detected in all
na
ENSSSCG00000004388
ENSG00000118690
Tissue enhanced
Detected in all
choroid plexus:
28.9
fallopian tube:
23.2
testis:
24.9
na
ENSSSCG00000008421
ENSG00000138039
Sus scrofa lutropin-choriogonadotropic hormone receptor-like (LOC100623180), mRNA.
Group enriched
Detected in many
ovary:
28.1
testis:
49.6
na
ENSSSCG00000010609
ENSG00000197748
Tissue enhanced
Detected in many
fallopian tube:
48.8
testis:
24.0
upper respiratory system:
18.9
na
ENSSSCG00000024588
ENSG00000104953
Tissue enhanced
Detected in many
lymphoid tissue:
10.0
male glands:
10.0
na
ENSSSCG00000034610
ENSG00000149948
Tissue enhanced
Detected in all
testis:
20.7
na
ENSSSCG00000035596
ENSG00000204410
MutS protein homolog 5
Tissue enhanced
Detected in all
epididymis:
32.9
retina:
31.7
na
ENSSSCG00000037088
ENSG00000184895
Tissue enhanced
Detected in some
choroid plexus:
2.2
pineal gland:
5.2
na
ENSSSCG00000038107
ENSG00000128040
Tissue enriched
Detected in many
testis:
52.0
NANOS1
ENSSSCG00000040025
ENSG00000188613
Nanos C2HC-type zinc finger 1
Tissue enhanced
Detected in many
male glands:
21.9
synovial tissue:
16.4
NOBOX
ENSSSCG00000024977
ENSG00000106410
Homeobox protein NOBOX
Group enriched
Detected in some
bone marrow:
13.4
epididymis:
6.3
NR0B1
ENSSSCG00000012199
ENSG00000169297
Nuclear receptor subfamily 0 group B member 1
Group enriched
Detected in some
adrenal gland:
13.9
male glands:
12.3
pituitary gland:
4.0
testis:
3.6
NR5A1
ENSSSCG00000005588
ENSG00000136931
Steroidogenic factor 1
Tissue enriched
Detected in some
adrenal gland:
82.9
PADI6
ENSSSCG00000003484
ENSG00000276747
Peptidyl arginine deiminase 6
Tissue enhanced
Detected in some
mesothelial tissue:
7.3
ovary:
4.2
PLCZ1
ENSSSCG00000000590
ENSG00000139151
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1
Tissue enriched
Detected in some
testis:
54.3
PMFBP1
ENSSSCG00000002747
ENSG00000118557
Polyamine modulated factor 1 binding protein 1
Group enriched
Detected in some
lens:
16.5
testis:
56.6
POF1B
ENSSSCG00000012462
ENSG00000124429
POF1B, actin binding protein
Tissue enhanced
Detected in some
cornea:
20.6
large intestine:
32.9
small intestine:
16.4
stomach:
27.4
upper respiratory system:
14.5
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